The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides51604 | SI:CH211-196P9.1-RELATED |
| Paelopatides51605 | SI:CH211-196P9.1-RELATED |
| Paelopatides51606 | PROTEIN CBG26694 |
| Paelopatides51607 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Paelopatides51608 | ENDONUCLEASE-RELATED |
| Paelopatides51609 | UNCHARACTERIZED |
| Paelopatides51610 | CBL |
| Paelopatides51612 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
| Paelopatides51613 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51614 | |
| Paelopatides51615 | |
| Paelopatides51616 | |
| Paelopatides51617 | |
| Paelopatides51618 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51619 | APPLE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51620 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| Paelopatides51621 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| Paelopatides51622 | |
| Paelopatides51623 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| Paelopatides51624 | LEUCINE-RICH REPEAT-CONTAINING |
| Paelopatides51625 | - |
| Paelopatides51626 | CHROMOSOME 1 OPEN READING FRAME 112 |
| Paelopatides51627 | CHROMOSOME 1 OPEN READING FRAME 112 |
| Paelopatides51628 | PROTEIN CBG26694 |
| Paelopatides51629 | PROTEIN CBG26694 |
| Paelopatides51631 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides51632 | CYTOCHROME P450 508A4-RELATED |
| Paelopatides51633 | |
| Paelopatides51634 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51635 | |
| Paelopatides51636 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51637 | |
| Paelopatides51638 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| Paelopatides51639 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| Paelopatides51640 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| Paelopatides51641 | GEO13361P1-RELATED |
| Paelopatides51642 | SERUM RESPONSE FACTOR HOMOLOG |
| Paelopatides51643 | NAD(P)H-HYDRATE EPIMERASE |
| Paelopatides51644 | |
| Paelopatides51645 | |
| Paelopatides51646 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides51647 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| Paelopatides51648 | |
| Paelopatides51649 | PORPHOBILINOGEN DEAMINASE |
| Paelopatides51650 | DNA POLYMERASE CATALYTIC SUBUNIT |
| Paelopatides51651 | |
| Paelopatides51652 | |
| Paelopatides51653 | |
| Paelopatides51654 | |
| Paelopatides51655 |
