Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_004846-T1 | |
LLU|FUN_004847-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
LLU|FUN_004848-T1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
LLU|FUN_004849-T1 | |
LLU|FUN_004850-T1 | |
LLU|FUN_004851-T1 | |
LLU|FUN_004852-T1 | |
LLU|FUN_004853-T1 | GLYCINE N-METHYLTRANSFERASE |
LLU|FUN_004854-T1 | GLYCINE N-METHYLTRANSFERASE |
LLU|FUN_004855-T1 | GLYCINE N-METHYLTRANSFERASE |
LLU|FUN_004856-T1 | GLYCINE N-METHYLTRANSFERASE |
LLU|FUN_004857-T1 | |
LLU|FUN_004858-T1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
LLU|FUN_004859-T1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
LLU|FUN_004860-T1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
LLU|FUN_004861-T1 | UNCHARACTERIZED |
LLU|FUN_004862-T1 | |
LLU|FUN_004863-T1 | |
LLU|FUN_004864-T1 | |
LLU|FUN_004865-T1 | |
LLU|FUN_004866-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_004867-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_004868-T1 | |
LLU|FUN_004869-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_004870-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_004871-T1 | |
LLU|FUN_004872-T1 | |
LLU|FUN_004873-T1 | |
LLU|FUN_004874-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_004875-T1 | |
LLU|FUN_004876-T1 | MIR DOMAIN-CONTAINING PROTEIN |
LLU|FUN_004877-T1 | |
LLU|FUN_004878-T1 | |
LLU|FUN_004879-T1 | |
LLU|FUN_004880-T1 | BRORIN FAMILY MEMBER |
LLU|FUN_004881-T1 | ALR/ERV |
LLU|FUN_004882-T1 | |
LLU|FUN_004883-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
LLU|FUN_004884-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
LLU|FUN_004885-T1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
LLU|FUN_004886-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_004887-T1 | CHROMOSOME 16 OPEN READING FRAME 96 |
LLU|FUN_004888-T1 | |
LLU|FUN_004889-T1 | |
LLU|FUN_004890-T1 | PROTEIN, PUTATIVE-RELATED |
LLU|FUN_004891-T1 | |
LLU|FUN_004892-T1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
LLU|FUN_004893-T1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
LLU|FUN_004894-T1 | NICE-3 |
LLU|FUN_004895-T1 | HIV-1 REV BINDING PROTEIN 2, 3 |