Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_004996-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_004997-T1 | |
LLU|FUN_004998-T1 | HOMEOBOX PROTEIN |
LLU|FUN_004999-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_005000-T1 | |
LLU|FUN_005001-T1 | |
LLU|FUN_005002-T1 | ENDO-1,4-BETA-GLUCANASE |
LLU|FUN_005003-T1 | |
LLU|FUN_005004-T1 | ENDO-1,4-BETA-GLUCANASE |
LLU|FUN_005005-T1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
LLU|FUN_005006-T1 | PROGESTERONE-INDUCED BLOCKING FACTOR 1 |
LLU|FUN_005007-T1 | |
LLU|FUN_005008-T1 | |
LLU|FUN_005009-T1 | |
LLU|FUN_005010-T1 | AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B |
LLU|FUN_005011-T1 | |
LLU|FUN_005012-T1 | |
LLU|FUN_005013-T1 | |
LLU|FUN_005014-T1 | UNCHARACTERIZED |
LLU|FUN_005015-T1 | APG9 AUTOPHAGY 9 |
LLU|FUN_005016-T1 | IRE1-RELATED |
LLU|FUN_005017-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
LLU|FUN_005018-T1 | BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN |
LLU|FUN_005019-T1 | SLEI FAMILY PROTEIN |
LLU|FUN_005020-T1 | |
LLU|FUN_005021-T1 | |
LLU|FUN_005022-T1 | |
LLU|FUN_005023-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
LLU|FUN_005024-T1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
LLU|FUN_005025-T1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
LLU|FUN_005026-T1 | BLR2807 PROTEIN |
LLU|FUN_005027-T1 | BLR2807 PROTEIN |
LLU|FUN_005028-T1 | CT120 PROTEIN |
LLU|FUN_005029-T1 | |
LLU|FUN_005030-T1 | BLR2807 PROTEIN |
LLU|FUN_005031-T1 | BLR2807 PROTEIN |
LLU|FUN_005032-T1 | ANKYRIN REPEAT PROTEIN |
LLU|FUN_005033-T1 | RING FINGER 10 FAMILY MEMBER |
LLU|FUN_005034-T1 | RING FINGER 10 FAMILY MEMBER |
LLU|FUN_005035-T1 | |
LLU|FUN_005036-T1 | |
LLU|FUN_005037-T1 | |
LLU|FUN_005038-T1 | |
LLU|FUN_005039-T1 | UNCHARACTERIZED |
LLU|FUN_005040-T1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
LLU|FUN_005041-T1 | VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21 |
LLU|FUN_005042-T1 | |
LLU|FUN_005043-T1 | BTB POZ DOMAIN CONTAINING 12 |
LLU|FUN_005044-T1 | |
LLU|FUN_005045-T1 |