Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_005046-T1 | |
LLU|FUN_005047-T1 | |
LLU|FUN_005048-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
LLU|FUN_005049-T1 | |
LLU|FUN_005050-T1 | |
LLU|FUN_005051-T1 | |
LLU|FUN_005052-T1 | |
LLU|FUN_005053-T1 | |
LLU|FUN_005054-T1 | |
LLU|FUN_005055-T1 | |
LLU|FUN_005056-T1 | B-CELL LYMPHOMA/LEUKEMIA 11 |
LLU|FUN_005057-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 87 |
LLU|FUN_005058-T1 | SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT |
LLU|FUN_005059-T1 | |
LLU|FUN_005060-T1 | REST COREPRESSOR COREST PROTEIN-RELATED |
LLU|FUN_005061-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
LLU|FUN_005062-T1 | PROTEASE U48 CAAX PRENYL PROTEASE RCE1 |
LLU|FUN_005063-T1 | SETA BINDING PROTEIN 1 |
LLU|FUN_005064-T1 | CELL DIVISION CYCLE 16,23,27 |
LLU|FUN_005065-T1 | INOSITOL-TETRAKISPHOSPHATE 1-KINASE |
LLU|FUN_005066-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_005067-T1 | TRANSMEMBRANE PROTEIN 251 |
LLU|FUN_005068-T1 | RIBOSOMAL PROTEIN S6 KINASE |
LLU|FUN_005069-T1 | AP COMPLEX SUBUNIT MU |
LLU|FUN_005070-T1 | |
LLU|FUN_005071-T1 | MCG131172, ISOFORM CRA_A |
LLU|FUN_005072-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
LLU|FUN_005073-T1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
LLU|FUN_005074-T1 | |
LLU|FUN_005075-T1 | |
LLU|FUN_005076-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
LLU|FUN_005077-T1 | |
LLU|FUN_005078-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
LLU|FUN_005079-T1 | |
LLU|FUN_005080-T1 | PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN |
LLU|FUN_005081-T1 | |
LLU|FUN_005082-T1 | - |
LLU|FUN_005083-T1 | N4BP1-RELATED |
LLU|FUN_005084-T1 | SOLUTE CARRIER FAMILY 35 |
LLU|FUN_005085-T1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
LLU|FUN_005086-T1 | GLUTATHIONE SYNTHETASE |
LLU|FUN_005087-T1 | |
LLU|FUN_005088-T1 | SPERIOLIN |
LLU|FUN_005089-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_005090-T1 | |
LLU|FUN_005091-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_005092-T1 | DESMOGLEIN FAMILY MEMBER |
LLU|FUN_005093-T1 | |
LLU|FUN_005094-T1 | WD40 REPEAT PF20 |
LLU|FUN_005095-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |