About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_005146-T1
LLU|FUN_005147-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_005148-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_005149-T1
LLU|FUN_005150-T1
LLU|FUN_005151-T1
LLU|FUN_005152-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
LLU|FUN_005153-T1
LLU|FUN_005154-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
LLU|FUN_005155-T1
LLU|FUN_005156-T1PYRUVATE KINASE
LLU|FUN_005157-T1
LLU|FUN_005158-T1
LLU|FUN_005159-T1MISSHAPEN LIKE KINASE 1
LLU|FUN_005160-T1ALKALINE CERAMIDASE 3
LLU|FUN_005161-T1SUGAR KINASE
LLU|FUN_005162-T1
LLU|FUN_005163-T1
LLU|FUN_005164-T1
LLU|FUN_005165-T1
LLU|FUN_005166-T1TRANSFERASE, PUTATIVE-RELATED
LLU|FUN_005168-T1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_005169-T1
LLU|FUN_005170-T1
LLU|FUN_005171-T1ES-2 PROTEIN - RELATED
LLU|FUN_005172-T1
LLU|FUN_005173-T1RETINOL DEHYDROGENASE
LLU|FUN_005174-T1
LLU|FUN_005175-T1
LLU|FUN_005176-T1
LLU|FUN_005177-T1
LLU|FUN_005178-T1INTELECTIN
LLU|FUN_005179-T1
LLU|FUN_005180-T1
LLU|FUN_005181-T1
LLU|FUN_005182-T1-
LLU|FUN_005183-T150S/60S RIBOSOMAL PROTEIN L16
LLU|FUN_005184-T1DEP DOMAIN CONTAINING PROTEIN 5
LLU|FUN_005185-T1
LLU|FUN_005186-T1DEP DOMAIN CONTAINING PROTEIN 5
LLU|FUN_005187-T1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
LLU|FUN_005188-T1PRE-MRNA-PROCESSING FACTOR 19
LLU|FUN_005189-T1
LLU|FUN_005190-T1PRE-MRNA-PROCESSING FACTOR 19
LLU|FUN_005191-T1TETRATRICOPEPTIDE REPEAT PROTEIN 14
LLU|FUN_005192-T1
LLU|FUN_005193-T1
LLU|FUN_005194-T1
LLU|FUN_005195-T1
LLU|FUN_005196-T1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
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