About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_005197-T1
LLU|FUN_005198-T1ZINC FINGER PROTEIN
LLU|FUN_005199-T1
LLU|FUN_005200-T1
LLU|FUN_005201-T1
LLU|FUN_005202-T1
LLU|FUN_005203-T1
LLU|FUN_005204-T1SPHINGOMYELIN PHOSPHODIESTERASE 4
LLU|FUN_005205-T1
LLU|FUN_005206-T1SPHINGOMYELIN PHOSPHODIESTERASE 4
LLU|FUN_005207-T1
LLU|FUN_005208-T1SPHINGOMYELIN PHOSPHODIESTERASE 4
LLU|FUN_005209-T1
LLU|FUN_005210-T1PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
LLU|FUN_005211-T1
LLU|FUN_005212-T1MUCIN 4-RELATED
LLU|FUN_005213-T1
LLU|FUN_005214-T1OVOCHYMASE-RELATED
LLU|FUN_005215-T1
LLU|FUN_005216-T1
LLU|FUN_005217-T1
LLU|FUN_005218-T1BLOC-1 COMPLEX SUBUNIT 1
LLU|FUN_005219-T1INTEGRIN ALPHA
LLU|FUN_005220-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
LLU|FUN_005221-T1
LLU|FUN_005222-T1INTEGRIN ALPHA
LLU|FUN_005223-T1INTEGRIN ALPHA
LLU|FUN_005224-T1PYM PROTEIN
LLU|FUN_005225-T1
LLU|FUN_005226-T1
LLU|FUN_005227-T1
LLU|FUN_005228-T1MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN
LLU|FUN_005229-T1CORNICHON-RELATED
LLU|FUN_005230-T1WD REPEAT PROTEIN 26-RELATED
LLU|FUN_005231-T1GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
LLU|FUN_005232-T1SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
LLU|FUN_005233-T1
LLU|FUN_005234-T1
LLU|FUN_005235-T1TRANSDUCIN BETA-LIKE PROTEIN 2
LLU|FUN_005236-T1
LLU|FUN_005237-T1PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR
LLU|FUN_005238-T1
LLU|FUN_005239-T1
LLU|FUN_005240-T1RAI16 PROTEIN-RELATED
LLU|FUN_005241-T1RAI16 PROTEIN-RELATED
LLU|FUN_005242-T1RAI16 PROTEIN-RELATED
LLU|FUN_005243-T1PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
LLU|FUN_005244-T1
LLU|FUN_005245-T1
LLU|FUN_005246-T1UNCHARACTERIZED
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