The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides48384 | EF-HAND DOMAIN-CONTAINING PROTEIN D |
| Paelopatides48385 | HYALURONIDASE |
| Paelopatides48386 | DNA HELICASE RECQ FAMILY MEMBER |
| Paelopatides48387 | HYALURONIDASE |
| Paelopatides48388 | UBIQUITINATION FACTOR E4 |
| Paelopatides48389 | |
| Paelopatides48390 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Paelopatides48391 | |
| Paelopatides48392 | POLYCOMB GROUP PROTEIN |
| Paelopatides48393 | POLYCOMB GROUP PROTEIN |
| Paelopatides48394 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 |
| Paelopatides48395 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 |
| Paelopatides48396 | F-BOX ONLY PROTEIN 42 |
| Paelopatides48397 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides48398 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides48399 | |
| Paelopatides48400 | PROTEIN CBG26694 |
| Paelopatides48401 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11 |
| Paelopatides48402 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11 |
| Paelopatides48403 | REVERSE TRANSCRIPTASES |
| Paelopatides48404 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48405 | |
| Paelopatides48406 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48408 | ACYL-COA DEHYDROGENASE |
| Paelopatides48409 | UNCHARACTERIZED |
| Paelopatides48410 | |
| Paelopatides48411 | |
| Paelopatides48412 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides48413 | PROTEIN SSUH2 HOMOLOG |
| Paelopatides48414 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
| Paelopatides48415 | |
| Paelopatides48416 | |
| Paelopatides48417 | |
| Paelopatides48418 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48419 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48420 | CHOLINE/ETHANOALAMINE KINASE |
| Paelopatides48421 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| Paelopatides48422 | |
| Paelopatides48423 | |
| Paelopatides48424 | NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1 |
| Paelopatides48425 | |
| Paelopatides48426 | |
| Paelopatides48427 | |
| Paelopatides48428 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides48429 | CENTROSOMAL PROTEIN 2 |
| Paelopatides48430 | CRUMBS FAMILY MEMBER |
| Paelopatides48431 | NOTCH LIGAND FAMILY MEMBER |
| Paelopatides48432 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48433 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| Paelopatides48434 | TRANSPOSASE, PUTATIVE-RELATED |
