The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides48227 | SORTING NEXIN-29-RELATED |
| Paelopatides48228 | SORTING NEXIN-29-RELATED |
| Paelopatides48229 | 60S RIBOSOMAL PROTEIN L10 |
| Paelopatides48230 | N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE |
| Paelopatides48231 | PROTEIN CBG26694 |
| Paelopatides48232 | N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE |
| Paelopatides48233 | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED |
| Paelopatides48234 | |
| Paelopatides48237 | ENDORIBONUCLEASE LACTB2 |
| Paelopatides48238 | |
| Paelopatides48239 | |
| Paelopatides48240 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides48241 | |
| Paelopatides48242 | |
| Paelopatides48243 | |
| Paelopatides48244 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
| Paelopatides48245 | FOCADHESIN FAMILY MEMBER |
| Paelopatides48246 | FORMIN-RELATED |
| Paelopatides48247 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48248 | |
| Paelopatides48249 | |
| Paelopatides48250 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides48251 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| Paelopatides48252 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| Paelopatides48253 | UNNAMED PRODUCT |
| Paelopatides48254 | LD44762P |
| Paelopatides48255 | LD44762P |
| Paelopatides48256 | |
| Paelopatides48257 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides48258 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides48259 | EPM2A-INTERACTING PROTEIN 1 |
| Paelopatides48260 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Paelopatides48261 | INACTIVE TYROSINE-PROTEIN KINASE 7 |
| Paelopatides48262 | |
| Paelopatides48263 | |
| Paelopatides48264 | BUCENTAUR RELATED |
| Paelopatides48265 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides48266 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Paelopatides48267 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides48268 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
| Paelopatides48269 | |
| Paelopatides48270 | |
| Paelopatides48271 | REVERSE TRANSCRIPTASES |
| Paelopatides48272 | PROTEIN CBG24663 |
| Paelopatides48274 | ENDONUCLEASE-RELATED |
| Paelopatides48275 | POL PROTEIN |
| Paelopatides48276 | PARANEOPLASTIC ANTIGEN |
| Paelopatides48277 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Paelopatides48278 | REVERSE TRANSCRIPTASES |
| Paelopatides48279 |
