The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides48280 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides48281 | |
| Paelopatides48282 | PEPTIDE DEFORMYLASE |
| Paelopatides48283 | |
| Paelopatides48284 | BONUS, ISOFORM C-RELATED |
| Paelopatides48285 | BONUS, ISOFORM C-RELATED |
| Paelopatides48286 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Paelopatides48287 | |
| Paelopatides48288 | HOMEOBOX PROTEIN EMX-RELATED |
| Paelopatides48289 | GMP REDUCTASE |
| Paelopatides48290 | |
| Paelopatides48291 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Paelopatides48292 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Paelopatides48293 | |
| Paelopatides48294 | NFAT |
| Paelopatides48295 | NUDIX HYDROLASE |
| Paelopatides48296 | NUDIX HYDROLASE |
| Paelopatides48297 | SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED |
| Paelopatides48298 | ENDONUCLEASE |
| Paelopatides48299 | BUCENTAUR RELATED |
| Paelopatides48300 | UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL |
| Paelopatides48301 | |
| Paelopatides48302 | |
| Paelopatides48303 | PROTEIN CBG26694 |
| Paelopatides48304 | PROTEIN CBG26694 |
| Paelopatides48305 | |
| Paelopatides48306 | |
| Paelopatides48309 | |
| Paelopatides48310 | PROTEIN CBG26694 |
| Paelopatides48311 | |
| Paelopatides48312 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| Paelopatides48313 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| Paelopatides48314 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| Paelopatides48315 | 39S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL |
| Paelopatides48316 | PROTEIN C7ORF21 |
| Paelopatides48317 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL |
| Paelopatides48318 | JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1 |
| Paelopatides48319 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 |
| Paelopatides48320 | CARBOXYLESTERASE |
| Paelopatides48321 | ACETYLCHOLINESTERASE |
| Paelopatides48322 | CARBOXYLESTERASE |
| Paelopatides48323 | ACETYLCHOLINESTERASE |
| Paelopatides48324 | ACETYLCHOLINESTERASE |
| Paelopatides48325 | CARBOXYLESTERASE |
| Paelopatides48326 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Paelopatides48327 | |
| Paelopatides48328 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Paelopatides48329 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides48330 | |
| Paelopatides48331 |
