The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides46825 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides46826 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides46827 | GH17980P-RELATED |
| Paelopatides46828 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46829 | |
| Paelopatides46830 | |
| Paelopatides46831 | ISLET CELL AUTOANTIGEN 1 |
| Paelopatides46832 | |
| Paelopatides46833 | |
| Paelopatides46834 | CYTIDINE MONOPHOSPHATE-N-ACETYLNEURAMINIC ACID HYDROXYLASE |
| Paelopatides46835 | TRANSPOSON |
| Paelopatides46836 | PROTEIN FAM221A-RELATED |
| Paelopatides46837 | |
| Paelopatides46838 | PROTEIN CBG26694 |
| Paelopatides46839 | PROTEIN CBG26694 |
| Paelopatides46840 | |
| Paelopatides46841 | TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides46842 | |
| Paelopatides46843 | |
| Paelopatides46844 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Paelopatides46845 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides46846 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46847 | - |
| Paelopatides46848 | RAS GTPASE-ACTIVATING PROTEINS |
| Paelopatides46849 | BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY |
| Paelopatides46850 | RAGULATOR COMPLEX PROTEIN LAMTOR4 |
| Paelopatides46851 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN |
| Paelopatides46852 | POLYCOMB GROUP PROTEIN |
| Paelopatides46853 | |
| Paelopatides46854 | |
| Paelopatides46855 | SRCR DOMAIN-CONTAINING PROTEIN |
| Paelopatides46857 | |
| Paelopatides46858 | CORNICHON-RELATED |
| Paelopatides46859 | SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED |
| Paelopatides46860 | RETROTRANSPOSON |
| Paelopatides46861 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46862 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides46863 | |
| Paelopatides46864 | GEM-ASSOCIATED PROTEIN 6 |
| Paelopatides46865 | |
| Paelopatides46866 | |
| Paelopatides46867 | |
| Paelopatides46868 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides46869 | |
| Paelopatides46870 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Paelopatides46871 | PROTEIN CBG26694 |
| Paelopatides46872 | |
| Paelopatides46873 | ENDONUCLEASE-RELATED |
| Paelopatides46878 | MACROGLOBULIN / COMPLEMENT |
| Paelopatides46879 | MACROGLOBULIN / COMPLEMENT |
