The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides46514 | PLEXIN |
| Paelopatides46515 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides46516 | PROTEIN CBG26694 |
| Paelopatides46517 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides46518 | SEQUESTOSOME 1-RELATED |
| Paelopatides46519 | |
| Paelopatides46520 | |
| Paelopatides46521 | SI:CH211-108C17.2-RELATED-RELATED |
| Paelopatides46522 | DUF614 FAMILY PROTEIN-RELATED |
| Paelopatides46523 | |
| Paelopatides46524 | PROTEIN CBG26694 |
| Paelopatides46525 | PROTEIN CBG26694 |
| Paelopatides46526 | |
| Paelopatides46527 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides46528 | |
| Paelopatides46529 | ENDONUCLEASE-RELATED |
| Paelopatides46530 | POL PROTEIN |
| Paelopatides46531 | LARVAL STORAGE PROTEIN/PHENOLOXIDASE |
| Paelopatides46532 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46533 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides46534 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides46535 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides46536 | |
| Paelopatides46537 | |
| Paelopatides46538 | |
| Paelopatides46539 | |
| Paelopatides46540 | |
| Paelopatides46541 | LD44762P |
| Paelopatides46542 | RETROTRANSPOSON |
| Paelopatides46543 | NOTCH LIGAND FAMILY MEMBER |
| Paelopatides46544 | |
| Paelopatides46545 | |
| Paelopatides46546 | SI:DKEY-256H2.1 |
| Paelopatides46547 | |
| Paelopatides46548 | FACTOR VIII-ASSOCIATED GENE 1 |
| Paelopatides46549 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| Paelopatides46550 | ATP-CITRATE SYNTHASE |
| Paelopatides46551 | PROSTAGLANDIN REDUCTASE |
| Paelopatides46552 | PROTEIN SIDEKICK |
| Paelopatides46553 | |
| Paelopatides46554 | UBIQUITIN DOMAIN-CONTAINING PROTEIN UBFD1 |
| Paelopatides46555 | SRCR DOMAIN-CONTAINING PROTEIN |
| Paelopatides46556 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| Paelopatides46557 | KETOACID-COENZYME A TRANSFERASE |
| Paelopatides46558 | |
| Paelopatides46559 | MULTICOPPER OXIDASE-RELATED |
| Paelopatides46560 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Paelopatides46561 | GTP-BINDING |
| Paelopatides46562 | |
| Paelopatides46563 | DNA-DIRECTED RNA POLYMERASE |
