The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides46100 | AMMONIUM TRANSPORTER |
| Paelopatides46101 | UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN |
| Paelopatides46102 | |
| Paelopatides46103 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Paelopatides46105 | |
| Paelopatides46106 | DER1-LIKE PROTEIN, DERLIN |
| Paelopatides46107 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides46108 | RE42071P |
| Paelopatides46109 | |
| Paelopatides46110 | |
| Paelopatides46111 | TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X |
| Paelopatides46112 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Paelopatides46113 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
| Paelopatides46114 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides46115 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides46116 | |
| Paelopatides46117 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46118 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46119 | |
| Paelopatides46120 | |
| Paelopatides46121 | |
| Paelopatides46122 | CRUMBS FAMILY MEMBER |
| Paelopatides46123 | |
| Paelopatides46124 | |
| Paelopatides46125 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
| Paelopatides46126 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17 |
| Paelopatides46127 | ENDONUCLEASE-RELATED |
| Paelopatides46128 | POL PROTEIN |
| Paelopatides46129 | |
| Paelopatides46130 | PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED |
| Paelopatides46131 | CALCIUM BINDING PROTEINS |
| Paelopatides46132 | |
| Paelopatides46133 | VACUOLAR PROTEIN SORTING 54 |
| Paelopatides46134 | UNCHARACTERIZED |
| Paelopatides46135 | |
| Paelopatides46136 | |
| Paelopatides46137 | |
| Paelopatides46138 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides46139 | |
| Paelopatides46140 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides46141 | |
| Paelopatides46142 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
| Paelopatides46143 | |
| Paelopatides46144 | |
| Paelopatides46145 | |
| Paelopatides46146 | |
| Paelopatides46147 | ZGC:195170 |
| Paelopatides46148 | 50S RIBOSOMAL PROTEIN L4 |
| Paelopatides46149 | |
| Paelopatides46150 | 50S RIBOSOMAL PROTEIN L4 |
