About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45837
Paelopatides45838RETROTRANSPOSON
Paelopatides45839RETROTRANSPOSON
Paelopatides45841REVERSE TRANSCRIPTASES
Paelopatides45842SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
Paelopatides45843TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER
Paelopatides45844SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides45845ZINC FINGER PROTEIN
Paelopatides45846
Paelopatides45847GOLGI REASSEMBLY STACKING PROTEIN GRASP
Paelopatides45848
Paelopatides45850PROTEIN HEATR9
Paelopatides45851
Paelopatides45852INDOLEAMINE 2,3-DIOXYGENASE
Paelopatides45854
Paelopatides45855GEM-ASSOCIATED PROTEIN 7
Paelopatides45856
Paelopatides45857ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides45858SI:CH211-108C17.2-RELATED-RELATED
Paelopatides45859BONUS, ISOFORM C-RELATED
Paelopatides45860UBIQUITIN-ACTIVATING ENZYME E1
Paelopatides45861DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Paelopatides45862
Paelopatides45863
Paelopatides45864NME/NM23 FAMILY MEMBER 8
Paelopatides45865LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides45866LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides45867FRIZZLED
Paelopatides45869
Paelopatides45870
Paelopatides45871CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides45872MUCIN 4-RELATED
Paelopatides45873PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides45874REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45875REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45877REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45878FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides45879
Paelopatides45880CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45881CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45882CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45883REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides45884CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45885CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides45886DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides45887
Paelopatides45888LITHOSTATHINE
Paelopatides45889DDB1- AND CUL4-ASSOCIATED FACTOR 15
Paelopatides4589052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides45891
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