Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_040583-T1 | |
LLU|FUN_040584-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
LLU|FUN_040585-T1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
LLU|FUN_040586-T1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
LLU|FUN_040587-T1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
LLU|FUN_040588-T1 | - |
LLU|FUN_040589-T1 | |
LLU|FUN_040590-T1 | |
LLU|FUN_040591-T1 | |
LLU|FUN_040592-T1 | DIOXYGENASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G02910)-RELATED |
LLU|FUN_040593-T1 | |
LLU|FUN_040594-T1 | |
LLU|FUN_040595-T1 | PHENYLALANYL-TRNA SYNTHETASE |
LLU|FUN_040596-T1 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
LLU|FUN_040597-T1 | ADENOSINE DEAMINASE |
LLU|FUN_040598-T1 | |
LLU|FUN_040599-T1 | |
LLU|FUN_040600-T1 | |
LLU|FUN_040601-T1 | 60S ACIDIC RIBOSOMAL PROTEIN P0 |
LLU|FUN_040602-T1 | TRANSCRIPTION FACTOR E2F |
LLU|FUN_040603-T1 | TRANSCRIPTION FACTOR E2F |
LLU|FUN_040604-T1 | |
LLU|FUN_040605-T1 | |
LLU|FUN_040606-T1 | LD33804P |
LLU|FUN_040607-T1 | BTB/POZ DOMAIN-CONTAINING |
LLU|FUN_040608-T1 | |
LLU|FUN_040609-T1 | NITRIC OXIDE SYNTHASE-RELATED |
LLU|FUN_040610-T1 | CADHERIN DOMAIN-CONTAINING PROTEIN |
LLU|FUN_040611-T1 | FMS INTERACTING PROTEIN |
LLU|FUN_040612-T1 | |
LLU|FUN_040613-T1 | RETINAL PROTEIN 4 |
LLU|FUN_040614-T1 | - |
LLU|FUN_040615-T1 | |
LLU|FUN_040616-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_040617-T1 | RABPHILIN, ISOFORM A |
LLU|FUN_040618-T1 | |
LLU|FUN_040619-T1 | |
LLU|FUN_040620-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_040621-T1 | |
LLU|FUN_040622-T1 | |
LLU|FUN_040623-T1 | |
LLU|FUN_040624-T1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
LLU|FUN_040625-T1 | PEPTIDYL-TRNA HYDROLASE 2 |
LLU|FUN_040626-T1 | CELL DIVISION CYCLE 16,23,27 |
LLU|FUN_040627-T1 | HIRA-INTERACTING PROTEIN 3 |
LLU|FUN_040628-T1 | |
LLU|FUN_040629-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_040630-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_040631-T1 | |
LLU|FUN_040632-T1 |