About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_040583-T1
LLU|FUN_040584-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57
LLU|FUN_040585-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
LLU|FUN_040586-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
LLU|FUN_040587-T1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
LLU|FUN_040588-T1-
LLU|FUN_040589-T1
LLU|FUN_040590-T1
LLU|FUN_040591-T1
LLU|FUN_040592-T1DIOXYGENASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G02910)-RELATED
LLU|FUN_040593-T1
LLU|FUN_040594-T1
LLU|FUN_040595-T1PHENYLALANYL-TRNA SYNTHETASE
LLU|FUN_040596-T1PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
LLU|FUN_040597-T1ADENOSINE DEAMINASE
LLU|FUN_040598-T1
LLU|FUN_040599-T1
LLU|FUN_040600-T1
LLU|FUN_040601-T160S ACIDIC RIBOSOMAL PROTEIN P0
LLU|FUN_040602-T1TRANSCRIPTION FACTOR E2F
LLU|FUN_040603-T1TRANSCRIPTION FACTOR E2F
LLU|FUN_040604-T1
LLU|FUN_040605-T1
LLU|FUN_040606-T1LD33804P
LLU|FUN_040607-T1BTB/POZ DOMAIN-CONTAINING
LLU|FUN_040608-T1
LLU|FUN_040609-T1NITRIC OXIDE SYNTHASE-RELATED
LLU|FUN_040610-T1CADHERIN DOMAIN-CONTAINING PROTEIN
LLU|FUN_040611-T1FMS INTERACTING PROTEIN
LLU|FUN_040612-T1
LLU|FUN_040613-T1RETINAL PROTEIN 4
LLU|FUN_040614-T1-
LLU|FUN_040615-T1
LLU|FUN_040616-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_040617-T1RABPHILIN, ISOFORM A
LLU|FUN_040618-T1
LLU|FUN_040619-T1
LLU|FUN_040620-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
LLU|FUN_040621-T1
LLU|FUN_040622-T1
LLU|FUN_040623-T1
LLU|FUN_040624-T1MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
LLU|FUN_040625-T1PEPTIDYL-TRNA HYDROLASE 2
LLU|FUN_040626-T1CELL DIVISION CYCLE 16,23,27
LLU|FUN_040627-T1HIRA-INTERACTING PROTEIN 3
LLU|FUN_040628-T1
LLU|FUN_040629-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_040630-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_040631-T1
LLU|FUN_040632-T1
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