Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_040683-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_040684-T1 | |
LLU|FUN_040685-T1 | |
LLU|FUN_040686-T1 | |
LLU|FUN_040687-T1 | HOMEOBOX PROTEIN EMX-RELATED |
LLU|FUN_040688-T1 | GUANYLYL CYCLASE |
LLU|FUN_040689-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 91 |
LLU|FUN_040690-T1 | MALE STERILITY PROTEIN 2-RELATED |
LLU|FUN_040691-T1 | |
LLU|FUN_040692-T1 | MALE STERILITY PROTEIN 2-RELATED |
LLU|FUN_040693-T1 | |
LLU|FUN_040694-T1 | |
LLU|FUN_040695-T1 | |
LLU|FUN_040696-T1 | |
LLU|FUN_040697-T1 | COILED-COIL DOMAIN CONTAINING 198 |
LLU|FUN_040698-T1 | ALPHA-MANNOSIDASE |
LLU|FUN_040699-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
LLU|FUN_040700-T1 | 2-OXOGLUTARATE DEHYDROGENASE |
LLU|FUN_040701-T1 | RAS-RELATED PROTEIN RAB |
LLU|FUN_040702-T1 | NUCLEOTIDE KINASE |
LLU|FUN_040703-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 |
LLU|FUN_040704-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
LLU|FUN_040705-T1 | |
LLU|FUN_040706-T1 | |
LLU|FUN_040707-T1 | DNA2/NAM7 HELICASE FAMILY |
LLU|FUN_040708-T1 | |
LLU|FUN_040709-T1 | |
LLU|FUN_040710-T1 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
LLU|FUN_040711-T1 | DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT |
LLU|FUN_040712-T1 | |
LLU|FUN_040713-T1 | - |
LLU|FUN_040714-T1 | PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED |
LLU|FUN_040715-T1 | RUBY-EYE2-LIKE PROTEIN |
LLU|FUN_040716-T1 | RUBY-EYE2-LIKE PROTEIN |
LLU|FUN_040717-T1 | RIBONUCLEASE H2 SUBUNIT C |
LLU|FUN_040718-T1 | |
LLU|FUN_040719-T1 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
LLU|FUN_040720-T1 | |
LLU|FUN_040721-T1 | |
LLU|FUN_040722-T1 | |
LLU|FUN_040723-T1 | |
LLU|FUN_040724-T1 | TRANSMEMBRANE PROTEIN |
LLU|FUN_040725-T1 | |
LLU|FUN_040726-T1 | |
LLU|FUN_040727-T1 | |
LLU|FUN_040728-T1 | INHIBITOR OF APOPTOSIS |
LLU|FUN_040729-T1 | INHIBITOR OF APOPTOSIS |
LLU|FUN_040730-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_040731-T1 | |
LLU|FUN_040732-T1 | G-PROTEIN COUPLED RECEPTOR |