About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_040533-T1HOMEOBOX PROTEIN NKX
LLU|FUN_040534-T1
LLU|FUN_040535-T1ZGC:174356
LLU|FUN_040536-T1ZGC:174356
LLU|FUN_040537-T1
LLU|FUN_040538-T1
LLU|FUN_040539-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_040540-T1
LLU|FUN_040541-T1
LLU|FUN_040542-T1
LLU|FUN_040543-T1
LLU|FUN_040544-T1
LLU|FUN_040545-T1
LLU|FUN_040546-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_040547-T1HELICASE
LLU|FUN_040548-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
LLU|FUN_040549-T1
LLU|FUN_040550-T1
LLU|FUN_040551-T1
LLU|FUN_040552-T1
LLU|FUN_040553-T1
LLU|FUN_040554-T1
LLU|FUN_040555-T1
LLU|FUN_040556-T1
LLU|FUN_040557-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_040558-T1-
LLU|FUN_040559-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_040560-T1
LLU|FUN_040561-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_040562-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_040563-T1
LLU|FUN_040564-T1
LLU|FUN_040565-T1
LLU|FUN_040566-T1TETRATRICOPEPTIDE REPEAT PROTEIN
LLU|FUN_040567-T1AXONEMAL INNER ARM DYNEIN LIGHT CHAIN 28
LLU|FUN_040568-T1HYDROXYMETHYLGLUTARYL-COA LYASE
LLU|FUN_040569-T1HYDROXYMETHYLGLUTARYL-COA LYASE
LLU|FUN_040570-T1PROTEASOME INHIBITOR
LLU|FUN_040571-T140S RIBOSOMAL PROTEIN S8
LLU|FUN_040572-T1
LLU|FUN_040573-T1OROFACIAL CLEFT 1 CANDIDATE GENE 1 PROTEIN
LLU|FUN_040574-T1
LLU|FUN_040575-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
LLU|FUN_040576-T1PROTEIN CBG12054-RELATED
LLU|FUN_040577-T1
LLU|FUN_040578-T1
LLU|FUN_040579-T1
LLU|FUN_040580-T1
LLU|FUN_040581-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_040582-T1SPERMATOGENESIS ASSOCIATED 11-RELATED
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