Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_039673-T1 | |
LLU|FUN_039674-T1 | |
LLU|FUN_039675-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_039676-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_039677-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_039678-T1 | |
LLU|FUN_039679-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_039680-T1 | |
LLU|FUN_039681-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_039682-T1 | |
LLU|FUN_039683-T1 | |
LLU|FUN_039684-T1 | |
LLU|FUN_039685-T1 | |
LLU|FUN_039686-T1 | |
LLU|FUN_039687-T1 | |
LLU|FUN_039688-T1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
LLU|FUN_039689-T1 | THIOESTERASE |
LLU|FUN_039690-T1 | UNCHARACTERIZED |
LLU|FUN_039691-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_039692-T1 | DEHYDROGENASE RELATED |
LLU|FUN_039693-T1 | |
LLU|FUN_039694-T1 | |
LLU|FUN_039695-T1 | |
LLU|FUN_039697-T1 | |
LLU|FUN_039698-T1 | - |
LLU|FUN_039699-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
LLU|FUN_039700-T1 | MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 |
LLU|FUN_039701-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 |
LLU|FUN_039702-T1 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
LLU|FUN_039703-T1 | ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED |
LLU|FUN_039704-T1 | CHROMOSOME 28 C12ORF29 HOMOLOG |
LLU|FUN_039705-T1 | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 |
LLU|FUN_039706-T1 | TRNA-DIHYDROURIDINE SYNTHASE |
LLU|FUN_039707-T1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
LLU|FUN_039708-T1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 |
LLU|FUN_039709-T1 | |
LLU|FUN_039710-T1 | |
LLU|FUN_039711-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_039712-T1 | |
LLU|FUN_039713-T1 | |
LLU|FUN_039714-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
LLU|FUN_039715-T1 | CYTOSOLIC CARBOXYPEPTIDASE |
LLU|FUN_039716-T1 | DNA-DIRECTED RNA POLYMERASE |
LLU|FUN_039717-T1 | HILLARIN |
LLU|FUN_039718-T1 | HILLARIN |
LLU|FUN_039719-T1 | |
LLU|FUN_039720-T1 | |
LLU|FUN_039721-T1 | RGD1565685 PROTEIN |
LLU|FUN_039722-T1 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
LLU|FUN_039723-T1 | PROGRAMMED CELL DEATH PROTEIN 5 |