About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_039673-T1
LLU|FUN_039674-T1
LLU|FUN_039675-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_039676-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_039677-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_039678-T1
LLU|FUN_039679-T1ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
LLU|FUN_039680-T1
LLU|FUN_039681-T1ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
LLU|FUN_039682-T1
LLU|FUN_039683-T1
LLU|FUN_039684-T1
LLU|FUN_039685-T1
LLU|FUN_039686-T1
LLU|FUN_039687-T1
LLU|FUN_039688-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
LLU|FUN_039689-T1THIOESTERASE
LLU|FUN_039690-T1UNCHARACTERIZED
LLU|FUN_039691-T1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
LLU|FUN_039692-T1DEHYDROGENASE RELATED
LLU|FUN_039693-T1
LLU|FUN_039694-T1
LLU|FUN_039695-T1
LLU|FUN_039697-T1
LLU|FUN_039698-T1-
LLU|FUN_039699-T1LEUCINE RICH REPEAT FAMILY PROTEIN
LLU|FUN_039700-T1MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2
LLU|FUN_039701-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 2
LLU|FUN_039702-T1MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN
LLU|FUN_039703-T1ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED
LLU|FUN_039704-T1CHROMOSOME 28 C12ORF29 HOMOLOG
LLU|FUN_039705-T1U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3
LLU|FUN_039706-T1TRNA-DIHYDROURIDINE SYNTHASE
LLU|FUN_039707-T1CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED
LLU|FUN_039708-T1SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1
LLU|FUN_039709-T1
LLU|FUN_039710-T1
LLU|FUN_039711-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_039712-T1
LLU|FUN_039713-T1
LLU|FUN_039714-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
LLU|FUN_039715-T1CYTOSOLIC CARBOXYPEPTIDASE
LLU|FUN_039716-T1DNA-DIRECTED RNA POLYMERASE
LLU|FUN_039717-T1HILLARIN
LLU|FUN_039718-T1HILLARIN
LLU|FUN_039719-T1
LLU|FUN_039720-T1
LLU|FUN_039721-T1RGD1565685 PROTEIN
LLU|FUN_039722-T1CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED
LLU|FUN_039723-T1PROGRAMMED CELL DEATH PROTEIN 5
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