Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_039724-T1 | CYCLIN D1-BINDING PROTEIN 1 |
LLU|FUN_039725-T1 | POLY(A) RNA POLYMERASE |
LLU|FUN_039726-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT |
LLU|FUN_039727-T1 | |
LLU|FUN_039728-T1 | RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 |
LLU|FUN_039729-T1 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 |
LLU|FUN_039730-T1 | |
LLU|FUN_039731-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_039732-T1 | |
LLU|FUN_039733-T1 | |
LLU|FUN_039734-T1 | |
LLU|FUN_039735-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_039736-T1 | TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED |
LLU|FUN_039737-T1 | |
LLU|FUN_039738-T1 | |
LLU|FUN_039739-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_039740-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
LLU|FUN_039741-T1 | AMMECR1 HOMOLOG |
LLU|FUN_039742-T1 | |
LLU|FUN_039743-T1 | WD40 REPEAT PROTEIN |
LLU|FUN_039744-T1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
LLU|FUN_039745-T1 | STRAWBERRY NOTCH-RELATED |
LLU|FUN_039746-T1 | |
LLU|FUN_039747-T1 | |
LLU|FUN_039748-T1 | |
LLU|FUN_039749-T1 | CALPONIN |
LLU|FUN_039750-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_039751-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_039752-T1 | |
LLU|FUN_039753-T1 | |
LLU|FUN_039754-T1 | |
LLU|FUN_039755-T1 | BETA-1,4-GALACTOSYLTRANSFERASE |
LLU|FUN_039756-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG |
LLU|FUN_039757-T1 | G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN |
LLU|FUN_039758-T1 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_039759-T1 | |
LLU|FUN_039760-T1 | |
LLU|FUN_039761-T1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_039762-T1 | |
LLU|FUN_039763-T1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
LLU|FUN_039764-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
LLU|FUN_039765-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_039766-T1 | |
LLU|FUN_039767-T1 | |
LLU|FUN_039768-T1 | |
LLU|FUN_039769-T1 | |
LLU|FUN_039770-T1 | |
LLU|FUN_039771-T1 | |
LLU|FUN_039772-T1 | |
LLU|FUN_039773-T1 |