Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_039571-T1 | |
LLU|FUN_039572-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_039573-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_039574-T1 | BAND 7 PROTEIN-RELATED |
LLU|FUN_039575-T1 | AAA-FAMILY ATPASE |
LLU|FUN_039576-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
LLU|FUN_039577-T1 | |
LLU|FUN_039578-T1 | |
LLU|FUN_039579-T1 | |
LLU|FUN_039580-T1 | |
LLU|FUN_039581-T1 | |
LLU|FUN_039582-T1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
LLU|FUN_039583-T1 | |
LLU|FUN_039584-T1 | |
LLU|FUN_039585-T1 | |
LLU|FUN_039586-T1 | |
LLU|FUN_039587-T1 | |
LLU|FUN_039588-T1 | |
LLU|FUN_039589-T1 | PYRUVATE CARBOXYLASE |
LLU|FUN_039590-T1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
LLU|FUN_039591-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 |
LLU|FUN_039592-T1 | |
LLU|FUN_039593-T1 | |
LLU|FUN_039594-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_039595-T1 | |
LLU|FUN_039596-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
LLU|FUN_039597-T1 | CADHERIN-23 |
LLU|FUN_039598-T1 | |
LLU|FUN_039599-T1 | DELTA(14)-STEROL REDUCTASE |
LLU|FUN_039600-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_039601-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_039602-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_039603-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 15 |
LLU|FUN_039604-T1 | FOLLISTATIN-RELATED |
LLU|FUN_039605-T1 | NADH-UBIQUINONE OXIDOREDUCTASE |
LLU|FUN_039606-T1 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
LLU|FUN_039607-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_039608-T1 | AGAP011099-PA |
LLU|FUN_039609-T1 | |
LLU|FUN_039610-T1 | BAND 7 PROTEIN-RELATED |
LLU|FUN_039611-T1 | STERILE20-LIKE KINASE, ISOFORM B-RELATED |
LLU|FUN_039612-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_039613-T1 | |
LLU|FUN_039614-T1 | CELL DIVISION PROTEIN KINASE |
LLU|FUN_039615-T1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
LLU|FUN_039616-T1 | |
LLU|FUN_039617-T1 | |
LLU|FUN_039618-T1 | |
LLU|FUN_039619-T1 | |
LLU|FUN_039620-T1 |