About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia luymesi (Species)

Original Name

Lamellibrachia luymesi van der Land & Nørrevang, 1975

Key Reference Paper

1. VAN DER LAND J. The systematic position of Lamellibrachia (Annelida, Vestimentifera)[J]. Zeitschrift fur Zoologische Systematik und Evolutionsforschung, Sonderheft, 1975, 1975: 86-101. (Land et al., 1975)

Etymology

Not stated. Perhaps (from the locality information given) named after a research vessel named "Luymes", in turn named after the hydrographer Johan Lambertus Hendrikus Luymes

Distribution

continental slope off Guyana, S America, North Atlantic Ocean, 8.0167, -57.4° (8 1' N, 57 24' W) "Luymes" Guyana Shelf Exp. sta. 101, depth 500 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA51646795.80 373/24.140.1636.9238,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_015790-T1-
LLU|FUN_015791-T1RB1-INDUCIBLE COILED-COIL
LLU|FUN_015792-T1RB1-INDUCIBLE COILED-COIL
LLU|FUN_015793-T1-
LLU|FUN_015794-T1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
LLU|FUN_015795-T1-
LLU|FUN_015796-T1CALCIUM BINDING PROTEINS
LLU|FUN_015797-T1CALCIUM BINDING PROTEINS
LLU|FUN_015798-T1MRNA EXPORT FACTOR AND BUB3
LLU|FUN_015799-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
LLU|FUN_015800-T1-
LLU|FUN_015801-T1-
LLU|FUN_015802-T1ENVOPLAKIN
LLU|FUN_015803-T1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
LLU|FUN_015804-T1-
LLU|FUN_015805-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 78
LLU|FUN_015806-T1SIGNAL PEPTIDE PEPTIDASE
LLU|FUN_015807-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_015808-T1-
LLU|FUN_015809-T1LEUCOKININ RECEPTOR-RELATED

Results of comparison between Lamellibrachia luymesi and its nearshore relatives from the paper (Li et al., 2019)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
PTHR44025LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEINPANTHER--expanded--
PTHR12011G-PROTEIN COUPLED RECEPTORPANTHER--expanded--
PTHR11177CHITINASEPANTHER--expanded--
PTHR28576PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEINPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR11119XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBERPANTHER--expanded--
PTHR10877POLYCYSTIN-RELATEDPANTHER--expanded--
PTHR13802MUCIN 4-RELATEDPANTHER--expanded--
PTHR10131TNF RECEPTOR ASSOCIATED FACTORPANTHER--expanded--
PTHR11908XANTHINE DEHYDROGENASEPANTHER--expanded--
PTHR11709MULTI-COPPER OXIDASEPANTHER--expanded--
PTHR14647GALACTOSE-3-O-SULFOTRANSFERASEPANTHER--expanded--
PTHR23033BETA1,3-GALACTOSYLTRANSFERASEPANTHER--expanded--
PTHR10283SOLUTE CARRIER FAMILY 13 MEMBERPANTHER--expanded--
PTHR24039FIBRILLINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR24221ABC TRANSPORTERPANTHER--expanded--
PTHR24033FAMILY NOT NAMEDPANTHER--expanded--
PTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORPANTHER--expanded--
PTHR11039NEBULINPANTHER--expanded--
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