Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_039267-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_039268-T1 | PROTEIN DISPATCHED-RELATED |
LLU|FUN_039269-T1 | |
LLU|FUN_039270-T1 | - |
LLU|FUN_039271-T1 | RAP GTPASE-ACTIVATING PROTEIN |
LLU|FUN_039272-T1 | |
LLU|FUN_039273-T1 | |
LLU|FUN_039274-T1 | AXIN INTERACTOR, DORSALIZATION-ASSOCIATED PROTEIN |
LLU|FUN_039275-T1 | CASEIN KINASE-RELATED |
LLU|FUN_039276-T1 | RBM25 PROTEIN |
LLU|FUN_039277-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_039278-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_039279-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_039280-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_039281-T1 | |
LLU|FUN_039282-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
LLU|FUN_039283-T1 | |
LLU|FUN_039284-T1 | LP04239P |
LLU|FUN_039285-T1 | |
LLU|FUN_039286-T1 | EGL NINE HOMOLOG-RELATED |
LLU|FUN_039287-T1 | EGL NINE HOMOLOG-RELATED |
LLU|FUN_039288-T1 | ABC1 FAMILY PROTEIN |
LLU|FUN_039289-T1 | NUCLEAR PROTEIN SKIP-RELATED |
LLU|FUN_039290-T1 | SERYL-TRNA SYNTHETASE |
LLU|FUN_039291-T1 | |
LLU|FUN_039292-T1 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
LLU|FUN_039293-T1 | MENIN |
LLU|FUN_039294-T1 | |
LLU|FUN_039295-T1 | |
LLU|FUN_039296-T1 | |
LLU|FUN_039297-T1 | |
LLU|FUN_039298-T1 | |
LLU|FUN_039299-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_039300-T1 | RE60986P |
LLU|FUN_039301-T1 | LEUCINE REPEAT ADAPTER PROTEIN 25 |
LLU|FUN_039302-T1 | SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1 |
LLU|FUN_039303-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_039304-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_039305-T1 | |
LLU|FUN_039306-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_039307-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
LLU|FUN_039308-T1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
LLU|FUN_039309-T1 | DIACYLGLYCEROL O-ACYLTRANSFERASE |
LLU|FUN_039310-T1 | CALPAIN |
LLU|FUN_039311-T1 | CALPAIN |
LLU|FUN_039312-T1 | |
LLU|FUN_039313-T1 | |
LLU|FUN_039314-T1 | |
LLU|FUN_039315-T1 | |
LLU|FUN_039316-T1 |