About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_039267-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_039268-T1PROTEIN DISPATCHED-RELATED
LLU|FUN_039269-T1
LLU|FUN_039270-T1-
LLU|FUN_039271-T1RAP GTPASE-ACTIVATING PROTEIN
LLU|FUN_039272-T1
LLU|FUN_039273-T1
LLU|FUN_039274-T1AXIN INTERACTOR, DORSALIZATION-ASSOCIATED PROTEIN
LLU|FUN_039275-T1CASEIN KINASE-RELATED
LLU|FUN_039276-T1RBM25 PROTEIN
LLU|FUN_039277-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_039278-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_039279-T1WD40 REPEAT DOMAIN 95
LLU|FUN_039280-T1WD40 REPEAT DOMAIN 95
LLU|FUN_039281-T1
LLU|FUN_039282-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
LLU|FUN_039283-T1
LLU|FUN_039284-T1LP04239P
LLU|FUN_039285-T1
LLU|FUN_039286-T1EGL NINE HOMOLOG-RELATED
LLU|FUN_039287-T1EGL NINE HOMOLOG-RELATED
LLU|FUN_039288-T1ABC1 FAMILY PROTEIN
LLU|FUN_039289-T1NUCLEAR PROTEIN SKIP-RELATED
LLU|FUN_039290-T1SERYL-TRNA SYNTHETASE
LLU|FUN_039291-T1
LLU|FUN_039292-T1CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED
LLU|FUN_039293-T1MENIN
LLU|FUN_039294-T1
LLU|FUN_039295-T1
LLU|FUN_039296-T1
LLU|FUN_039297-T1
LLU|FUN_039298-T1
LLU|FUN_039299-T1ATP-BINDING CASSETTE SUB-FAMILY C
LLU|FUN_039300-T1RE60986P
LLU|FUN_039301-T1LEUCINE REPEAT ADAPTER PROTEIN 25
LLU|FUN_039302-T1SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1
LLU|FUN_039303-T1CRUMBS FAMILY MEMBER
LLU|FUN_039304-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_039305-T1
LLU|FUN_039306-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_039307-T1E3 UBIQUITIN-PROTEIN LIGASE TRIP12
LLU|FUN_039308-T1SH2-SH3 ADAPTOR PROTEIN-RELATED
LLU|FUN_039309-T1DIACYLGLYCEROL O-ACYLTRANSFERASE
LLU|FUN_039310-T1CALPAIN
LLU|FUN_039311-T1CALPAIN
LLU|FUN_039312-T1
LLU|FUN_039313-T1
LLU|FUN_039314-T1
LLU|FUN_039315-T1
LLU|FUN_039316-T1
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