Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_039017-T1 | RHO FAMILY GTPASE |
LLU|FUN_039018-T1 | TYROSINE-PROTEIN PHOSPHATASE CORKSCREW |
LLU|FUN_039019-T1 | TYROSINE-PROTEIN PHOSPHATASE CORKSCREW |
LLU|FUN_039020-T1 | TYROSINE-PROTEIN PHOSPHATASE CORKSCREW |
LLU|FUN_039021-T1 | TYROSINE-PROTEIN PHOSPHATASE CORKSCREW |
LLU|FUN_039022-T1 | |
LLU|FUN_039023-T1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11 |
LLU|FUN_039024-T1 | GDP-MANNOSE 4,6-DEHYDRATASE |
LLU|FUN_039025-T1 | FORKHEAD BOX PROTEIN |
LLU|FUN_039026-T1 | |
LLU|FUN_039027-T1 | |
LLU|FUN_039028-T1 | |
LLU|FUN_039029-T1 | |
LLU|FUN_039030-T1 | |
LLU|FUN_039031-T1 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 |
LLU|FUN_039032-T1 | |
LLU|FUN_039033-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN E |
LLU|FUN_039034-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_039035-T1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_039036-T1 | |
LLU|FUN_039037-T1 | UNCHARACTERIZED |
LLU|FUN_039038-T1 | |
LLU|FUN_039039-T1 | |
LLU|FUN_039040-T1 | |
LLU|FUN_039041-T1 | ZINC FINGER PROTEIN |
LLU|FUN_039042-T1 | |
LLU|FUN_039043-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_039044-T1 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
LLU|FUN_039045-T1 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
LLU|FUN_039046-T1 | UNCHARACTERIZED |
LLU|FUN_039047-T1 | - |
LLU|FUN_039048-T1 | |
LLU|FUN_039049-T1 | SEC14 RELATED PROTEIN |
LLU|FUN_039050-T1 | |
LLU|FUN_039051-T1 | SEC14 RELATED PROTEIN |
LLU|FUN_039052-T1 | |
LLU|FUN_039053-T1 | |
LLU|FUN_039054-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_039055-T1 | |
LLU|FUN_039056-T1 | REPETIN |
LLU|FUN_039057-T1 | BLR2807 PROTEIN |
LLU|FUN_039058-T1 | |
LLU|FUN_039059-T1 | RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED |
LLU|FUN_039060-T1 | |
LLU|FUN_039061-T1 | |
LLU|FUN_039062-T1 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
LLU|FUN_039063-T1 | |
LLU|FUN_039064-T1 | LYMPHOID-SPECIFIC HELICASE |
LLU|FUN_039065-T1 | LYMPHOID-SPECIFIC HELICASE |
LLU|FUN_039066-T1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |