About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_039067-T1
LLU|FUN_039068-T1
LLU|FUN_039069-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
LLU|FUN_039070-T1PEPTIDYLPROLYL ISOMERASE
LLU|FUN_039071-T1ZINC FINGER PROTEIN
LLU|FUN_039072-T1
LLU|FUN_039073-T1TRANSCRIPTION INITIATION FACTOR TFIID
LLU|FUN_039074-T1-
LLU|FUN_039075-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
LLU|FUN_039076-T1PROTEIN PHOSPHATASE 2C
LLU|FUN_039077-T1
LLU|FUN_039078-T1VESICULAR-FUSION PROTEIN NSF
LLU|FUN_039079-T1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
LLU|FUN_039080-T1COP9 SIGNALOSOME COMPLEX SUBUNIT 8
LLU|FUN_039081-T1UNCHARACTERIZED
LLU|FUN_039082-T1UNCHARACTERIZED
LLU|FUN_039083-T1
LLU|FUN_039084-T1
LLU|FUN_039085-T1
LLU|FUN_039086-T1
LLU|FUN_039087-T1ALKALINE PHOSPHATASE
LLU|FUN_039088-T1
LLU|FUN_039089-T1RHO GTPASE-ACTIVATING PROTEIN 190
LLU|FUN_039090-T1NUCLEAR FUSION PROTEIN FUS2
LLU|FUN_039091-T1SH3 DOMAIN-CONTAINING
LLU|FUN_039092-T1TUBULIN
LLU|FUN_039093-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
LLU|FUN_039094-T1
LLU|FUN_039095-T1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
LLU|FUN_039096-T1
LLU|FUN_039097-T1
LLU|FUN_039098-T1
LLU|FUN_039099-T1TYROSINE-PROTEIN KINASE RECEPTOR
LLU|FUN_039100-T1
LLU|FUN_039101-T1
LLU|FUN_039102-T1UBIQUITIN DOMAIN-CONTAINING PROTEIN UBFD1
LLU|FUN_039103-T1
LLU|FUN_039104-T1CALCIUM BINDING PROTEIN
LLU|FUN_039105-T1
LLU|FUN_039106-T1
LLU|FUN_039107-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_039108-T1PETER PAN-RELATED
LLU|FUN_039109-T1AGAP003710-PA
LLU|FUN_039110-T1SEC24-RELATED PROTEIN
LLU|FUN_039111-T1
LLU|FUN_039112-T1
LLU|FUN_039113-T1
LLU|FUN_039114-T1LUNG ADENOMA SUSCEPTIBILITY PROTEIN 2
LLU|FUN_039115-T1
LLU|FUN_039116-T1
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