About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_038565-T1
LLU|FUN_038566-T1
LLU|FUN_038567-T1
LLU|FUN_038568-T1
LLU|FUN_038569-T1
LLU|FUN_038570-T1C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
LLU|FUN_038571-T1
LLU|FUN_038572-T1
LLU|FUN_038573-T1
LLU|FUN_038574-T1
LLU|FUN_038575-T1
LLU|FUN_038576-T1
LLU|FUN_038577-T1
LLU|FUN_038578-T1C-TYPE LECTIN SUPERFAMILY MEMBER
LLU|FUN_038579-T1
LLU|FUN_038580-T1
LLU|FUN_038581-T1
LLU|FUN_038582-T1
LLU|FUN_038583-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
LLU|FUN_038584-T1RUN AND SH3 DOMAIN CONTAINING
LLU|FUN_038585-T1
LLU|FUN_038586-T1
LLU|FUN_038587-T1TATA-BOX BINDING PROTEIN
LLU|FUN_038588-T1
LLU|FUN_038589-T1OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1
LLU|FUN_038590-T1LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN
LLU|FUN_038591-T1
LLU|FUN_038592-T1
LLU|FUN_038593-T1DNA LIGASE
LLU|FUN_038594-T1
LLU|FUN_038595-T1
LLU|FUN_038596-T1MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE
LLU|FUN_038597-T1
LLU|FUN_038598-T1
LLU|FUN_038599-T1
LLU|FUN_038600-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_038601-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_038602-T1LP10445P
LLU|FUN_038603-T1HELICASE RELATED
LLU|FUN_038604-T1MELANOMA INHIBITORY ACTIVITY-RELATED
LLU|FUN_038605-T1THADA/DEATH RECEPTOR INTERACTING PROTEIN
LLU|FUN_038606-T1
LLU|FUN_038607-T1FERM DOMAIN (PROTEIN4.1-EZRIN-RADIXIN-MOESIN) FAMILY
LLU|FUN_038608-T1ALPHA-AMYLASE FAMILY MEMBER
LLU|FUN_038609-T1PHOSPHODIESTERASE HL
LLU|FUN_038610-T1
LLU|FUN_038611-T1ATP SYNTHASE GAMMA-RELATED
LLU|FUN_038612-T1
LLU|FUN_038613-T1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
LLU|FUN_038614-T1
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