About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_038515-T1SOLUTE CARRIER FAMILY 13 MEMBER
LLU|FUN_038516-T1RING FINGER PROTEIN 25
LLU|FUN_038517-T1
LLU|FUN_038518-T1
LLU|FUN_038519-T1
LLU|FUN_038520-T1SOLUTE CARRIER FAMILY 13 MEMBER
LLU|FUN_038521-T1URICASE AND TRANSTHYRETIN-RELATED
LLU|FUN_038522-T1
LLU|FUN_038523-T1
LLU|FUN_038524-T1
LLU|FUN_038525-T1ZGC:174356
LLU|FUN_038526-T1RNA BINDING PROTEIN
LLU|FUN_038527-T1
LLU|FUN_038528-T1
LLU|FUN_038529-T1
LLU|FUN_038530-T1PTD012 PROTEIN
LLU|FUN_038531-T1
LLU|FUN_038532-T1
LLU|FUN_038533-T1
LLU|FUN_038534-T1
LLU|FUN_038535-T1PTD012 PROTEIN
LLU|FUN_038536-T1TRNASE Z TRZ1
LLU|FUN_038537-T1NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3
LLU|FUN_038538-T1
LLU|FUN_038539-T1
LLU|FUN_038540-T1
LLU|FUN_038541-T1RAS-RELATED PROTEIN RAB
LLU|FUN_038542-T1
LLU|FUN_038543-T1
LLU|FUN_038544-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
LLU|FUN_038545-T1
LLU|FUN_038546-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
LLU|FUN_038547-T1
LLU|FUN_038548-T1
LLU|FUN_038549-T1
LLU|FUN_038550-T1
LLU|FUN_038551-T1
LLU|FUN_038552-T1
LLU|FUN_038553-T1
LLU|FUN_038554-T1PHD FINGER PROTEIN 12
LLU|FUN_038555-T1INTEGRAL MEMBRANE PROTEIN DGCR2/IDD
LLU|FUN_038556-T1CALPAIN
LLU|FUN_038557-T1
LLU|FUN_038558-T1CALPAIN
LLU|FUN_038559-T1REPETIN
LLU|FUN_038560-T1
LLU|FUN_038561-T1
LLU|FUN_038562-T1MATRIX METALLOPROTEINASE
LLU|FUN_038563-T1
LLU|FUN_038564-T1
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