Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_038409-T1 | |
LLU|FUN_038410-T1 | BETA1,3-GALACTOSYLTRANSFERASE |
LLU|FUN_038411-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_038412-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_038413-T1 | |
LLU|FUN_038414-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_038415-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_038416-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_038417-T1 | |
LLU|FUN_038418-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_038419-T1 | |
LLU|FUN_038420-T1 | |
LLU|FUN_038421-T1 | |
LLU|FUN_038422-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_038423-T1 | |
LLU|FUN_038424-T1 | |
LLU|FUN_038425-T1 | |
LLU|FUN_038426-T1 | |
LLU|FUN_038427-T1 | YIPPEE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_038428-T1 | INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN |
LLU|FUN_038429-T1 | PROTEIN CBG05131 |
LLU|FUN_038430-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_038431-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_038432-T1 | |
LLU|FUN_038433-T1 | |
LLU|FUN_038434-T1 | |
LLU|FUN_038435-T1 | |
LLU|FUN_038436-T1 | |
LLU|FUN_038437-T1 | TRANSPORTER |
LLU|FUN_038438-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_038439-T1 | |
LLU|FUN_038440-T1 | PAPILLOMAVIRUS REGULATORY FACTOR PRF-1 |
LLU|FUN_038441-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_038442-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_038443-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_038444-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_038445-T1 | |
LLU|FUN_038446-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_038447-T1 | |
LLU|FUN_038448-T1 | |
LLU|FUN_038449-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_038450-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_038451-T1 | |
LLU|FUN_038452-T1 | |
LLU|FUN_038453-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_038454-T1 | |
LLU|FUN_038455-T1 | |
LLU|FUN_038456-T1 | |
LLU|FUN_038457-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_038458-T1 | UDP-GLUCOSE 4-EPIMERASE |