About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_038409-T1
LLU|FUN_038410-T1BETA1,3-GALACTOSYLTRANSFERASE
LLU|FUN_038411-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_038412-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_038413-T1
LLU|FUN_038414-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_038415-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_038416-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_038417-T1
LLU|FUN_038418-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_038419-T1
LLU|FUN_038420-T1
LLU|FUN_038421-T1
LLU|FUN_038422-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_038423-T1
LLU|FUN_038424-T1
LLU|FUN_038425-T1
LLU|FUN_038426-T1
LLU|FUN_038427-T1YIPPEE DOMAIN-CONTAINING PROTEIN
LLU|FUN_038428-T1INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN
LLU|FUN_038429-T1PROTEIN CBG05131
LLU|FUN_038430-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
LLU|FUN_038431-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
LLU|FUN_038432-T1
LLU|FUN_038433-T1
LLU|FUN_038434-T1
LLU|FUN_038435-T1
LLU|FUN_038436-T1
LLU|FUN_038437-T1TRANSPORTER
LLU|FUN_038438-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_038439-T1
LLU|FUN_038440-T1PAPILLOMAVIRUS REGULATORY FACTOR PRF-1
LLU|FUN_038441-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_038442-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_038443-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_038444-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_038445-T1
LLU|FUN_038446-T1CRUMBS FAMILY MEMBER
LLU|FUN_038447-T1
LLU|FUN_038448-T1
LLU|FUN_038449-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_038450-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_038451-T1
LLU|FUN_038452-T1
LLU|FUN_038453-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_038454-T1
LLU|FUN_038455-T1
LLU|FUN_038456-T1
LLU|FUN_038457-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_038458-T1UDP-GLUCOSE 4-EPIMERASE
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