Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_037847-T1 | |
LLU|FUN_037848-T1 | PROTEIN EVA-1 |
LLU|FUN_037849-T1 | |
LLU|FUN_037850-T1 | |
LLU|FUN_037851-T1 | |
LLU|FUN_037852-T1 | |
LLU|FUN_037853-T1 | THROMBOSPONDIN TYPE I DOMAIN-CONTAINING 1 |
LLU|FUN_037854-T1 | SEC14 RELATED PROTEIN |
LLU|FUN_037855-T1 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
LLU|FUN_037856-T1 | CENTROSOMAL PROTEIN POC5 |
LLU|FUN_037857-T1 | |
LLU|FUN_037858-T1 | SNF2/RAD54 HELICASE FAMILY |
LLU|FUN_037859-T1 | C5ORF35 |
LLU|FUN_037860-T1 | |
LLU|FUN_037861-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_037862-T1 | |
LLU|FUN_037863-T1 | |
LLU|FUN_037864-T1 | |
LLU|FUN_037865-T1 | ARSENITE METHYLTRANSFERASE |
LLU|FUN_037866-T1 | POLYCOMB GROUP RING FINGER PROTEIN |
LLU|FUN_037867-T1 | C20ORF30 PROTEIN |
LLU|FUN_037868-T1 | SEC15 |
LLU|FUN_037869-T1 | SIDEROFLEXIN |
LLU|FUN_037870-T1 | PROTEIN CBG24663 |
LLU|FUN_037871-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
LLU|FUN_037872-T1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
LLU|FUN_037873-T1 | |
LLU|FUN_037874-T1 | |
LLU|FUN_037875-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_037876-T1 | |
LLU|FUN_037877-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_037878-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_037879-T1 | |
LLU|FUN_037880-T1 | |
LLU|FUN_037881-T1 | GUANYLYL CYCLASE |
LLU|FUN_037882-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_037883-T1 | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR |
LLU|FUN_037884-T1 | ZINC FINGER PROTEIN |
LLU|FUN_037885-T1 | METAXIN RELATED |
LLU|FUN_037886-T1 | METAXIN RELATED |
LLU|FUN_037887-T1 | METAXIN RELATED |
LLU|FUN_037888-T1 | METAXIN RELATED |
LLU|FUN_037889-T1 | METAXIN RELATED |
LLU|FUN_037890-T1 | T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN |
LLU|FUN_037891-T1 | |
LLU|FUN_037892-T1 | |
LLU|FUN_037893-T1 | |
LLU|FUN_037894-T1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
LLU|FUN_037895-T1 | MUCIN-17 |
LLU|FUN_037896-T1 |