Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_037543-T1 | POPEYE DOMAIN CONTAINING PROTEIN |
LLU|FUN_037544-T1 | POPEYE DOMAIN CONTAINING PROTEIN |
LLU|FUN_037545-T1 | 39S RIBOSOMAL PROTEIN L43 |
LLU|FUN_037546-T1 | BETA-1,4-GALACTOSYLTRANSFERASE |
LLU|FUN_037548-T1 | CHEMOKINE C-C MOTIF RECEPTOR 1 |
LLU|FUN_037549-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_037550-T1 | LP04239P |
LLU|FUN_037551-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_037552-T1 | |
LLU|FUN_037553-T1 | |
LLU|FUN_037554-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_037555-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_037556-T1 | |
LLU|FUN_037557-T1 | |
LLU|FUN_037558-T1 | |
LLU|FUN_037559-T1 | |
LLU|FUN_037560-T1 | |
LLU|FUN_037561-T1 | SERINE/THREONINE-PROTEIN KINASE TAO |
LLU|FUN_037562-T1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
LLU|FUN_037563-T1 | |
LLU|FUN_037564-T1 | |
LLU|FUN_037565-T1 | |
LLU|FUN_037566-T1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
LLU|FUN_037567-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
LLU|FUN_037568-T1 | ARCHEASE |
LLU|FUN_037569-T1 | DESTABILASE-RELATED |
LLU|FUN_037570-T1 | DESTABILASE-RELATED |
LLU|FUN_037571-T1 | DESTABILASE-RELATED |
LLU|FUN_037572-T1 | |
LLU|FUN_037573-T1 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
LLU|FUN_037574-T1 | SYNTROPHIN |
LLU|FUN_037575-T1 | |
LLU|FUN_037576-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_037577-T1 | CYTOKINE RECEPTOR |
LLU|FUN_037578-T1 | |
LLU|FUN_037579-T1 | |
LLU|FUN_037580-T1 | RGD1565685 PROTEIN |
LLU|FUN_037581-T1 | COLLAGEN ALPHA |
LLU|FUN_037582-T1 | |
LLU|FUN_037583-T1 | COLLAGEN ALPHA |
LLU|FUN_037584-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_037585-T1 | |
LLU|FUN_037586-T1 | |
LLU|FUN_037587-T1 | TRANSLATION ELONGATION FACTOR-RELATED |
LLU|FUN_037588-T1 | STABILIZER OF AXONEMAL MICROTUBULES 2 |
LLU|FUN_037589-T1 | |
LLU|FUN_037590-T1 | |
LLU|FUN_037591-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
LLU|FUN_037592-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
LLU|FUN_037593-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |