Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_037339-T1 | CYSTEINE-RICH MOTOR NEURON 1 PROTEIN |
LLU|FUN_037340-T1 | KRAB DOMAIN C2H2 ZINC FINGER |
LLU|FUN_037341-T1 | SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE |
LLU|FUN_037342-T1 | |
LLU|FUN_037343-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_037344-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_037345-T1 | |
LLU|FUN_037346-T1 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT |
LLU|FUN_037347-T1 | |
LLU|FUN_037348-T1 | ASPARTATE AMINOTRANSFERASE |
LLU|FUN_037349-T1 | |
LLU|FUN_037350-T1 | |
LLU|FUN_037351-T1 | |
LLU|FUN_037352-T1 | |
LLU|FUN_037353-T1 | CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN |
LLU|FUN_037354-T1 | - |
LLU|FUN_037355-T1 | VILLIN |
LLU|FUN_037356-T1 | VILLIN |
LLU|FUN_037357-T1 | |
LLU|FUN_037358-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 22 |
LLU|FUN_037359-T1 | ECDYSONE-INDUCIBLE GENE E1, ISOFORM A |
LLU|FUN_037360-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_037361-T1 | |
LLU|FUN_037362-T1 | |
LLU|FUN_037363-T1 | |
LLU|FUN_037364-T1 | |
LLU|FUN_037365-T1 | |
LLU|FUN_037366-T1 | |
LLU|FUN_037367-T1 | |
LLU|FUN_037368-T1 | DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN |
LLU|FUN_037369-T1 | |
LLU|FUN_037370-T1 | |
LLU|FUN_037371-T1 | VIRAL IAP-ASSOCIATED FACTOR HOMOLOG |
LLU|FUN_037372-T1 | PHD FINGER PROTEIN 20-RELATED |
LLU|FUN_037373-T1 | SOLUTE CARRIER FAMILY 17 |
LLU|FUN_037374-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
LLU|FUN_037375-T1 | |
LLU|FUN_037376-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
LLU|FUN_037377-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
LLU|FUN_037378-T1 | FUSELESS, ISOFORM A |
LLU|FUN_037379-T1 | |
LLU|FUN_037380-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
LLU|FUN_037381-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
LLU|FUN_037382-T1 | BCL-2 RELATED |
LLU|FUN_037383-T1 | |
LLU|FUN_037384-T1 | |
LLU|FUN_037385-T1 | |
LLU|FUN_037386-T1 | |
LLU|FUN_037387-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
LLU|FUN_037388-T1 |