About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040456-T1
OS493_040457-T1
OS493_040458-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_040459-T1
OS493_040460-T1RAP GTPASE-ACTIVATING PROTEIN
OS493_040461-T1
OS493_040462-T1
OS493_040463-T1
OS493_040464-T1
OS493_040465-T1PEPTIDASE S9 PROLYL OLIGOPEPTIDASE
OS493_040466-T1
OS493_040467-T1
OS493_040469-T1AP COMPLEX SUBUNIT MU
OS493_040470-T1
OS493_040471-T1
OS493_040472-T1
OS493_040473-T1
OS493_040474-T1
OS493_040475-T1
OS493_040476-T1
OS493_040477-T1
OS493_040478-T1JITTERBUG, ISOFORM N
OS493_040479-T1JITTERBUG, ISOFORM N
OS493_040480-T1
OS493_040482-T1OPSIN
OS493_040483-T1
OS493_040484-T1MITOFERRIN-1-RELATED
OS493_040486-T1
OS493_040487-T1DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED
OS493_040488-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_040489-T1
OS493_040490-T1CYTOCHROME P450 FAMILY 3
OS493_040491-T1CYTOCHROME P450 FAMILY 3
OS493_040492-T1NEUROPEPTIDE Y RECEPTOR
OS493_040493-T1
OS493_040494-T1RB1-INDUCIBLE COILED-COIL
OS493_040497-T1DYNEIN HEAVY CHAIN
OS493_040499-T1PROTEIN OF UNKNOWN FUNCTION DUF729
OS493_040500-T1
OS493_040501-T1BATTENIN
OS493_040502-T1PROTEIN CBG05349
OS493_040503-T1PROTEIN CBG05349
OS493_040504-T1
OS493_040505-T1
OS493_040506-T1
OS493_040507-T1
OS493_040508-T1UNCHARACTERIZED
OS493_040509-T1DNA POLYMERASE SUBUNIT GAMMA-1
OS493_040510-T1
OS493_040511-T1
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