About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040340-T1
OS493_040341-T1
OS493_040342-T1
OS493_040343-T1
OS493_040344-T1
OS493_040345-T1
OS493_040346-T1MULTICOPPER OXIDASE-RELATED
OS493_040347-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_040349-T1ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER
OS493_040350-T1
OS493_040351-T1COLLAGEN ALPHA
OS493_040352-T1DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
OS493_040353-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
OS493_040354-T1ATP-DEPENDENT RNA HELICASE
OS493_040355-T1
OS493_040356-T1
OS493_040357-T1
OS493_040358-T1
OS493_040359-T1LONGIN DOMAIN-CONTAINING PROTEIN
OS493_040360-T1
OS493_040361-T1HYPOTHETICAL HEAT DOMAIN-CONTAINING
OS493_040362-T1
OS493_040363-T1
OS493_040365-T1
OS493_040366-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_040367-T1
OS493_040368-T1
OS493_040369-T1
OS493_040370-T1
OS493_040371-T1
OS493_040372-T1TWO PORE CHANNEL 3
OS493_040374-T115-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
OS493_040375-T1
OS493_040376-T1XANTHINE DEHYDROGENASE
OS493_040378-T1ALLANTOINASE
OS493_040379-T1JM1 PROTEIN
OS493_040380-T1MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
OS493_040381-T1
OS493_040382-T1HEMK METHYLTRANSFERASE
OS493_040383-T1
OS493_040384-T1DUAL SPECIFICITY PROTEIN KINASE
OS493_040385-T1
OS493_040386-T1INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG
OS493_040387-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_040389-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_040390-T1
OS493_040391-T1
OS493_040392-T1
OS493_040393-T1
OS493_040394-T1
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