About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040000-T1
OS493_040001-T1
OS493_040002-T1CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
OS493_040003-T1CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
OS493_040004-T1
OS493_040005-T1UNCHARACTERIZED
OS493_040006-T1
OS493_040007-T1CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
OS493_040009-T1
OS493_040010-T1CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
OS493_040011-T1
OS493_040012-T1
OS493_040013-T1
OS493_040014-T1
OS493_040016-T1PERFORIN-LIKE PROTEIN 1
OS493_040017-T1
OS493_040018-T1
OS493_040019-T1
OS493_040020-T1
OS493_040022-T1
OS493_040023-T1COATOMER SUBUNIT EPSILON
OS493_040024-T1PERFORIN-LIKE PROTEIN 1
OS493_040025-T1MAJOR VAULT PROTEIN
OS493_040026-T1
OS493_040027-T1TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
OS493_040028-T1
OS493_040029-T1
OS493_040030-T1
OS493_040031-T1
OS493_040032-T1
OS493_040034-T1
OS493_040035-T1
OS493_040036-T1UNCHARACTERIZED
OS493_040037-T1UNCHARACTERIZED
OS493_040038-T1MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1
OS493_040040-T1
OS493_040041-T1RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
OS493_040042-T1RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
OS493_040043-T1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
OS493_040044-T1-
OS493_040045-T1CYTOSOLIC REGULATOR PIANISSIMO
OS493_040046-T1
OS493_040047-T1IFT140/172-RELATED
OS493_040048-T1
OS493_040049-T1
OS493_040050-T1
OS493_040051-T1BASIGIN RELATED
OS493_040052-T1
OS493_040053-T1
OS493_040054-T1
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