Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_040121-T1 | IQ DOMAIN-CONTAINING PROTEIN D |
OS493_040122-T1 | MYOSIN |
OS493_040123-T1 | |
OS493_040124-T1 | |
OS493_040125-T1 | |
OS493_040126-T1 | |
OS493_040127-T1 | ALPHA-MANNOSIDASE |
OS493_040128-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
OS493_040129-T1 | |
OS493_040130-T1 | MALE FERTILITY FACTOR KL5 |
OS493_040131-T1 | |
OS493_040132-T1 | |
OS493_040133-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_040134-T1 | |
OS493_040135-T1 | |
OS493_040136-T1 | |
OS493_040137-T1 | ACYL-COENZYME A THIOESTERASE-RELATED |
OS493_040138-T1 | METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE |
OS493_040139-T1 | RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED |
OS493_040140-T1 | BCL-2 RELATED |
OS493_040141-T1 | |
OS493_040143-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I |
OS493_040144-T1 | CADHERIN-23 |
OS493_040145-T1 | |
OS493_040146-T1 | |
OS493_040147-T1 | |
OS493_040149-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_040150-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_040151-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_040152-T1 | |
OS493_040153-T1 | |
OS493_040154-T1 | |
OS493_040155-T1 | |
OS493_040156-T1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 |
OS493_040157-T1 | |
OS493_040158-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_040159-T1 | |
OS493_040162-T1 | |
OS493_040163-T1 | |
OS493_040164-T1 | COLLAGEN ALPHA |
OS493_040165-T1 | |
OS493_040166-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_040167-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_040169-T1 | |
OS493_040170-T1 | HIGH MOBILITY GROUP B PROTEIN 13 |
OS493_040171-T1 | ALANINE AMINOTRANSFERASE |
OS493_040172-T1 | |
OS493_040173-T1 | |
OS493_040174-T1 | IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1 |
OS493_040175-T1 |