About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040121-T1IQ DOMAIN-CONTAINING PROTEIN D
OS493_040122-T1MYOSIN
OS493_040123-T1
OS493_040124-T1
OS493_040125-T1
OS493_040126-T1
OS493_040127-T1ALPHA-MANNOSIDASE
OS493_040128-T1IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
OS493_040129-T1
OS493_040130-T1MALE FERTILITY FACTOR KL5
OS493_040131-T1
OS493_040132-T1
OS493_040133-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_040134-T1
OS493_040135-T1
OS493_040136-T1
OS493_040137-T1ACYL-COENZYME A THIOESTERASE-RELATED
OS493_040138-T1METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE
OS493_040139-T1RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED
OS493_040140-T1BCL-2 RELATED
OS493_040141-T1
OS493_040143-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
OS493_040144-T1CADHERIN-23
OS493_040145-T1
OS493_040146-T1
OS493_040147-T1
OS493_040149-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_040150-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_040151-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_040152-T1
OS493_040153-T1
OS493_040154-T1
OS493_040155-T1
OS493_040156-T1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
OS493_040157-T1
OS493_040158-T1CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
OS493_040159-T1
OS493_040162-T1
OS493_040163-T1
OS493_040164-T1COLLAGEN ALPHA
OS493_040165-T1
OS493_040166-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_040167-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_040169-T1
OS493_040170-T1HIGH MOBILITY GROUP B PROTEIN 13
OS493_040171-T1ALANINE AMINOTRANSFERASE
OS493_040172-T1
OS493_040173-T1
OS493_040174-T1IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1
OS493_040175-T1
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