About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040228-T1
OS493_040229-T1SNF2/RAD54 FAMILY MEMBER
OS493_040230-T1
OS493_040231-T1
OS493_040232-T1
OS493_040233-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
OS493_040234-T1
OS493_040236-T1
OS493_040237-T1DNA2/NAM7 HELICASE FAMILY
OS493_040239-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_040240-T1WNT RELATED
OS493_040241-T1WNT RELATED
OS493_040242-T1
OS493_040243-T1
OS493_040244-T1
OS493_040245-T1RB1-INDUCIBLE COILED-COIL
OS493_040247-T1
OS493_040248-T1
OS493_040249-T1
OS493_040250-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
OS493_040251-T1
OS493_040252-T1ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10
OS493_040253-T1
OS493_040254-T1FATTY ACID SYNTHASE
OS493_040255-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
OS493_040256-T1
OS493_040257-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
OS493_040258-T1OVOCHYMASE-RELATED
OS493_040259-T1
OS493_040260-T1RIKEN CDNA 4921504E06 GENE
OS493_040261-T1
OS493_040262-T1TRPL TRANSLOCATION DEFECT PROTEIN 14
OS493_040263-T1
OS493_040264-T1
OS493_040265-T1TYROSINE-PROTEIN KINASE
OS493_040266-T1
OS493_040267-T1
OS493_040268-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
OS493_040269-T1
OS493_040270-T1ACYL-COA SYNTHETASE
OS493_040271-T1
OS493_040273-T1
OS493_040274-T1
OS493_040275-T1MALE FERTILITY FACTOR KL5
OS493_040277-T1
OS493_040278-T1PRE-MRNA SPLICING FACTOR PRP8
OS493_040279-T1PRE-MRNA SPLICING FACTOR PRP8
OS493_040280-T1
OS493_040281-T1MAKORIN-RELATED
OS493_040282-T1
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