About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040055-T1
OS493_040056-T1GPI TRANSAMIDASE COMPONENT PIG-U
OS493_040057-T1
OS493_040058-T1
OS493_040059-T1
OS493_040060-T1
OS493_040061-T1
OS493_040062-T1
OS493_040063-T1WD REPEAT-CONTAINING PROTEIN 27
OS493_040064-T1
OS493_040065-T1
OS493_040072-T1
OS493_040073-T1
OS493_040074-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_040075-T1
OS493_040076-T1YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER
OS493_040077-T1
OS493_040078-T1
OS493_040082-T1
OS493_040084-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_040085-T1COLLAGEN ALPHA
OS493_040086-T11-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE
OS493_040087-T11-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE
OS493_040088-T1
OS493_040089-T1
OS493_040090-T1TRANSPOSON
OS493_040091-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_040092-T1
OS493_040093-T1EF HAND DOMAIN FAMILY A1,A2-RELATED
OS493_040095-T1GRANULIN
OS493_040096-T1MONOCARBOXYLATE TRANSPORTER
OS493_040097-T1MONOCARBOXYLATE TRANSPORTER
OS493_040099-T1ATP-DEPENDENT RNA HELICASE
OS493_040100-T1
OS493_040101-T1
OS493_040105-T1
OS493_040106-T1EPH RECEPTOR A5
OS493_040107-T1FERRITIN
OS493_040108-T1
OS493_040109-T1INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG
OS493_040110-T1INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG
OS493_040112-T1
OS493_040113-T1
OS493_040114-T1PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
OS493_040115-T1
OS493_040116-T1
OS493_040117-T1
OS493_040118-T1
OS493_040119-T1OLIGOPHRENIN 1
OS493_040120-T1SPECTRIN REPEAT CONTAINING NUCLEAR ENVELOPE PROTEIN 2
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