About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_039943-T1
OS493_039944-T1STRAWBERRY NOTCH-RELATED
OS493_039945-T1SULFITE REDUCTASE
OS493_039946-T1
OS493_039947-T1
OS493_039948-T1
OS493_039949-T1FMS INTERACTING PROTEIN
OS493_039950-T1TRANSCRIPTION ELONGATION FACTOR SPT6
OS493_039951-T1
OS493_039952-T1
OS493_039953-T1
OS493_039955-T1
OS493_039957-T1TETRATRICOPEPTIDE REPEAT PROTEIN 8
OS493_039958-T1WNT RELATED
OS493_039959-T1
OS493_039960-T1
OS493_039961-T1
OS493_039962-T1D-LACTATE DEHYDROGENASE
OS493_039963-T1
OS493_039964-T1
OS493_039965-T1RNA HELICASE
OS493_039966-T1
OS493_039967-T1
OS493_039968-T1
OS493_039969-T1
OS493_039970-T1SERINE/THREONINE PROTEIN KINASE
OS493_039972-T1
OS493_039975-T1
OS493_039976-T1
OS493_039977-T1
OS493_039978-T1
OS493_039979-T1DIPHTHAMIDE BIOSYNTHESIS PROTEIN
OS493_039980-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_039981-T1IMPORTIN ALPHA
OS493_039982-T1IMPORTIN ALPHA
OS493_039985-T1WD REPEAT-CONTAINING PROTEIN 36
OS493_039986-T1
OS493_039987-T1MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
OS493_039988-T1SH3 DOMAIN-CONTAINING
OS493_039989-T1
OS493_039990-T1
OS493_039991-T1
OS493_039992-T1AGAP003327-PA
OS493_039993-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_039994-T1REGULATORY PROTEIN ZESTE
OS493_039995-T1
OS493_039996-T1MALE FERTILITY FACTOR KL5
OS493_039997-T1MUCIN 4-RELATED
OS493_039998-T1
OS493_039999-T1REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
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