About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_039669-T1TWO PORE CALCIUM CHANNEL PROTEIN 2
OS493_039670-T1
OS493_039671-T1-
OS493_039672-T1
OS493_039673-T1
OS493_039674-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_039675-T1PROTEIN CBG03580
OS493_039676-T1DOLICHYL GLYCOSYLTRANSFERASE
OS493_039677-T1
OS493_039678-T1
OS493_039679-T1CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED
OS493_039680-T1
OS493_039681-T1
OS493_039682-T1DNA2/NAM7 HELICASE FAMILY
OS493_039683-T1DNA2/NAM7 HELICASE FAMILY
OS493_039684-T1
OS493_039685-T1
OS493_039687-T1CYTOKINE RECEPTOR
OS493_039688-T1
OS493_039689-T1
OS493_039690-T1AGAP008005-PA
OS493_039691-T1
OS493_039693-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_039696-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
OS493_039697-T1
OS493_039698-T1
OS493_039699-T1
OS493_039700-T1N-ACETYLTRANSFERASE 9
OS493_039701-T1UNCHARACTERIZED
OS493_039702-T1UNCHARACTERIZED
OS493_039703-T1
OS493_039704-T1FARNESYL-PYROPHOSPHATE SYNTHETASE
OS493_039705-T1FARNESYL-PYROPHOSPHATE SYNTHETASE
OS493_039706-T1DEATH DOMAIN-CONTAINING PROTEIN
OS493_039707-T1
OS493_039708-T1
OS493_039711-T1
OS493_039712-T1
OS493_039713-T1GLYCOGEN SYNTHASE
OS493_039714-T1
OS493_039715-T1KETIMINE REDUCTASE MU-CRYSTALLIN
OS493_039716-T1
OS493_039717-T1
OS493_039718-T1AGAP003327-PA
OS493_039719-T1
OS493_039720-T1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
OS493_039721-T1
OS493_039722-T1
OS493_039723-T1NEPHRIN
OS493_039724-T1TITIN
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