About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_039888-T1O-ACYLTRANSFERASE
OS493_039889-T1
OS493_039890-T1
OS493_039891-T1
OS493_039892-T1
OS493_039893-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 300
OS493_039894-T1
OS493_039895-T1
OS493_039896-T1
OS493_039897-T1
OS493_039898-T1L-ASPARAGINASE
OS493_039899-T1PHOSPHOMANNOMUTASE 45A
OS493_039900-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
OS493_039901-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
OS493_039902-T1AGAP011572-PA
OS493_039903-T1AGAP011572-PA
OS493_039905-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_039906-T1
OS493_039907-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_039908-T1
OS493_039909-T1
OS493_039912-T1
OS493_039913-T1
OS493_039914-T1KELCH PROTEIN
OS493_039915-T1
OS493_039916-T1
OS493_039917-T1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
OS493_039918-T1
OS493_039919-T1IFT140/172-RELATED
OS493_039920-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
OS493_039921-T1
OS493_039922-T1IP14615P
OS493_039923-T1
OS493_039924-T1
OS493_039925-T1
OS493_039926-T1PHOSPHOTRIESTERASE-RELATED
OS493_039927-T1PHOSPHOTRIESTERASE-RELATED
OS493_039928-T1
OS493_039929-T1
OS493_039930-T1
OS493_039932-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_039934-T1MIDASIN-RELATED
OS493_039935-T1MIDASIN-RELATED
OS493_039936-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61
OS493_039937-T1NG37
OS493_039938-T1
OS493_039939-T1
OS493_039940-T1
OS493_039941-T1
OS493_039942-T1
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