About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_040395-T1
OS493_040397-T1
OS493_040398-T1
OS493_040401-T1
OS493_040403-T1XANTHINE DEHYDROGENASE
OS493_040404-T1XANTHINE DEHYDROGENASE
OS493_040405-T1
OS493_040406-T1
OS493_040407-T1METALLOPROTEASE
OS493_040409-T1I[[H]] CHANNEL, ISOFORM E
OS493_040410-T1
OS493_040411-T1
OS493_040412-T1SI:CH211-108C17.2-RELATED-RELATED
OS493_040413-T1
OS493_040414-T1PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1
OS493_040415-T1
OS493_040416-T1PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
OS493_040417-T1
OS493_040418-T1
OS493_040419-T1CENTROSOMAL PROTEIN 2
OS493_040420-T1CENTROSOMAL PROTEIN 2
OS493_040421-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
OS493_040422-T1
OS493_040425-T1PROLYL ENDOPEPTIDASE
OS493_040426-T1
OS493_040427-T1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
OS493_040428-T1
OS493_040429-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_040430-T1
OS493_040431-T1
OS493_040432-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_040433-T1
OS493_040434-T1PEROXISOMAL BIOGENESIS FACTOR 11
OS493_040435-T1
OS493_040436-T1BETA LACTAMASE DOMAIN
OS493_040437-T1RHO FAMILY GTPASE
OS493_040439-T1
OS493_040440-T1
OS493_040441-T1NF-KAPPA-B INHIBITOR ALPHA
OS493_040442-T1
OS493_040443-T1
OS493_040444-T1SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
OS493_040445-T1SEPTIN
OS493_040448-T1
OS493_040449-T1
OS493_040450-T1METALLOENDOPEPTIDASE OMA1
OS493_040452-T1
OS493_040453-T1
OS493_040454-T1
OS493_040455-T1
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