Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_040513-T1 | |
OS493_040515-T1 | |
OS493_040516-T1 | |
OS493_040517-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_040518-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_040519-T1 | |
OS493_040520-T1 | |
OS493_040521-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B |
OS493_040522-T1 | ELONGATION FACTOR G, MITOCHONDRIAL |
OS493_040523-T1 | CENTROSOMAL PROTEIN-RELATED |
OS493_040524-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_040525-T1 | |
OS493_040526-T1 | SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN |
OS493_040527-T1 | SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN |
OS493_040528-T1 | PR DOMAIN ZINC FINGER PROTEIN |
OS493_040529-T1 | |
OS493_040530-T1 | |
OS493_040532-T1 | |
OS493_040534-T1 | |
OS493_040535-T1 | ZINC FINGER RNA-BINDING PROTEIN |
OS493_040537-T1 | |
OS493_040538-T1 | |
OS493_040539-T1 | STEROL DESATURASE-RELATED PROTEIN |
OS493_040540-T1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
OS493_040541-T1 | BARDET-BIEDL SYNDROME 2 PROTEIN |
OS493_040542-T1 | GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1 |
OS493_040544-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_040545-T1 | MALE FERTILITY FACTOR KL5 |
OS493_040546-T1 | |
OS493_040547-T1 | |
OS493_040548-T1 | DNA POLYMERASE DELTA SUBUNIT 3 |
OS493_040549-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_040550-T1 | |
OS493_040551-T1 | |
OS493_040552-T1 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
OS493_040553-T1 | |
OS493_040554-T1 | TETRASPANIN |
OS493_040555-T1 | |
OS493_040556-T1 | |
OS493_040557-T1 | REGULATOR OF CHROMOSOME CONDENSATION |
OS493_040558-T1 | |
OS493_040559-T1 | TRANSAMIDASE |
OS493_040560-T1 | |
OS493_040561-T1 | |
OS493_040562-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_040563-T1 | |
OS493_040564-T1 | WD REPEAT-CONTAINING PROTEIN 55 |
OS493_040565-T1 | PROTEIN CBG12474 |
OS493_040566-T1 | 40S RIBOSOMAL PROTEIN S3A |
OS493_040567-T1 | AP-5 COMPLEX SUBUNIT ZETA-1 |