The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides38542 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| Paelopatides38543 | |
| Paelopatides38544 | |
| Paelopatides38545 | |
| Paelopatides38546 | |
| Paelopatides38547 | SENTRIN/SUMO-SPECIFIC PROTEASE |
| Paelopatides38548 | |
| Paelopatides38549 | CXC2 DOMAIN-CONTAINING PROTEIN |
| Paelopatides38550 | |
| Paelopatides38551 | |
| Paelopatides38552 | TRANSPOSON |
| Paelopatides38553 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides38554 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Paelopatides38555 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides38556 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Paelopatides38557 | LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN |
| Paelopatides38558 | CONTACTIN 5 |
| Paelopatides38559 | |
| Paelopatides38560 | |
| Paelopatides38561 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Paelopatides38562 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides38563 | |
| Paelopatides38564 | |
| Paelopatides38565 | |
| Paelopatides38566 | PROTEIN CBG26694 |
| Paelopatides38567 | PARANEOPLASTIC ANTIGEN |
| Paelopatides38568 | |
| Paelopatides38570 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Paelopatides38571 | - |
| Paelopatides38572 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Paelopatides38573 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Paelopatides38574 | |
| Paelopatides38575 | |
| Paelopatides38576 | TRANSPOSON |
| Paelopatides38577 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| Paelopatides38578 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides38579 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides38580 | |
| Paelopatides38581 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides38582 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides38583 | |
| Paelopatides38584 | ZINC FINGER PROTEIN 839 |
| Paelopatides38585 | |
| Paelopatides38586 | REVERSE TRANSCRIPTASES |
| Paelopatides38587 | SYNAPTOTAGMIN 14, ISOFORM D |
| Paelopatides38588 | |
| Paelopatides38589 | |
| Paelopatides38590 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides38591 | |
| Paelopatides38592 |
