About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633 Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36102N-MYC DOWNSTREAM REGULATED
Paelopatides36103N-MYC DOWNSTREAM REGULATED
Paelopatides36104
Paelopatides36105PROTEIN CBG26694
Paelopatides36106PROTEIN CBG26694
Paelopatides36107SLD5 PROTEIN
Paelopatides36108ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36109ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36110SLD5 PROTEIN
Paelopatides36111
Paelopatides36112PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
Paelopatides36113RING ZINC FINGER PROTEIN
Paelopatides36114GLUTAREDOXIN FAMILY MEMBER
Paelopatides36115
Paelopatides36116PERIAXIN/AHNAK
Paelopatides36117ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Paelopatides36118ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Paelopatides36119ALPHA CATENIN
Paelopatides36120WD40 REPEAT DOMAIN 95
Paelopatides36121
Paelopatides36122
Paelopatides36123PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides36124ENDONUCLEASE
Paelopatides36126CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT
Paelopatides36127GM2 GANGLIOSIDE ACTIVATOR PROTEIN
Paelopatides36128TRANSMEMBRANE PROTEIN HTP-1 RELATED
Paelopatides36129PROGESTERONE-INDUCED BLOCKING FACTOR 1
Paelopatides36130NUDIX HYDROLASE RELATED
Paelopatides36131AF4/FMR2 FAMILY MEMBER
Paelopatides36133
Paelopatides36134
Paelopatides36135
Paelopatides36136E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides36137
Paelopatides36138ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides36139ELL-ASSOCIATED FACTOR EAF
Paelopatides36140CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
Paelopatides36141B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides36142ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36144
Paelopatides36145ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides36146N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides36147CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36148CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36149FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides36150PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
Paelopatides36151REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36152
Paelopatides36153
Paelopatides36155ALPHA- 1,3 -FUCOSYLTRANSFERASE
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