The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides35895 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| Paelopatides35896 | LUPUS LA PROTEIN-RELATED |
| Paelopatides35897 | |
| Paelopatides35898 | |
| Paelopatides35899 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Paelopatides35900 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Paelopatides35901 | |
| Paelopatides35902 | ALPHA-2,8-SIALYLTRANSFERASE |
| Paelopatides35903 | ALPHA-2,8-SIALYLTRANSFERASE |
| Paelopatides35904 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides35905 | ARFAPTIN-RELATED |
| Paelopatides35906 | |
| Paelopatides35909 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| Paelopatides35910 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| Paelopatides35911 | |
| Paelopatides35912 | LARGE PROLINE-RICH PROTEIN BAG6 |
| Paelopatides35913 | HOMEOBOX PROTEIN |
| Paelopatides35914 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| Paelopatides35915 | |
| Paelopatides35916 | |
| Paelopatides35917 | ATP7, ISOFORM B |
| Paelopatides35918 | PROTEASOME MATURATION PROTEIN UMP1 |
| Paelopatides35919 | ATP-CITRATE SYNTHASE |
| Paelopatides35920 | |
| Paelopatides35921 | COMM DOMAIN-CONTAINING PROTEIN 3 |
| Paelopatides35922 | REVERSE TRANSCRIPTASES |
| Paelopatides35923 | TESTIS-EXPRESSED PROTEIN 36 |
| Paelopatides35924 | BONUS, ISOFORM C-RELATED |
| Paelopatides35926 | ARYLSULFATASE |
| Paelopatides35927 | |
| Paelopatides35928 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Paelopatides35929 | LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN |
| Paelopatides35930 | TRANSCRIPTIONAL ADAPTER 1 |
| Paelopatides35931 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| Paelopatides35932 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides35933 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides35934 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides35935 | CEREBRAL PROTEIN-11-RELATED |
| Paelopatides35936 | |
| Paelopatides35937 | GLUTATHIONE S-TRANSFERASE |
| Paelopatides35938 | |
| Paelopatides35939 | |
| Paelopatides35940 | PROTEIN PHOSPHATASE |
| Paelopatides35941 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
| Paelopatides35942 | OUTER SEGMENT 5 |
| Paelopatides35943 | REVERSE TRANSCRIPTASES |
| Paelopatides35944 | RHOMBOID-RELATED PROTEIN |
| Paelopatides35945 | OS02G0202900 PROTEIN |
| Paelopatides35946 | KELCH PROTEIN |
| Paelopatides35947 |
