About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_035857-T1SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2
OS493_035858-T1PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR
OS493_035859-T1RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED
OS493_035860-T1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
OS493_035861-T1
OS493_035862-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_035863-T1
OS493_035864-T1
OS493_035865-T1
OS493_035866-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_035867-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_035868-T1
OS493_035869-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
OS493_035870-T1
OS493_035872-T1
OS493_035873-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_035874-T1
OS493_035875-T1
OS493_035876-T1COLLAGEN ALPHA
OS493_035877-T1PROTEIN LIN-28
OS493_035878-T1
OS493_035879-T1EXPRESSED PROTEIN
OS493_035880-T1INTIMAL THICKNESS RECEPTOR-RELATED
OS493_035881-T1HMG-BOX TRANSCRIPTION FACTOR BBX
OS493_035882-T1
OS493_035883-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_035884-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_035885-T1MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
OS493_035886-T1
OS493_035887-T1U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
OS493_035888-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_035889-T1
OS493_035890-T1
OS493_035891-T1ZINC FINGER PROTEIN
OS493_035892-T1
OS493_035893-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
OS493_035894-T1NINEIN
OS493_035895-T1
OS493_035896-T1
OS493_035897-T1
OS493_035898-T1
OS493_035899-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
OS493_035900-T1
OS493_035901-T1
OS493_035902-T1
OS493_035903-T1
OS493_035904-T1
OS493_035905-T1
OS493_035906-T1
OS493_035907-T1
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