About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_035806-T1SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
OS493_035807-T1REST COREPRESSOR COREST PROTEIN-RELATED
OS493_035808-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_035809-T1HEAT SHOCK PROTEIN 70KDA
OS493_035810-T1MOLYBDOPTERIN BIOSYNTHESIS PROTEIN
OS493_035811-T1MOLYBDENUM COFACTOR BIOSYNTHESIS
OS493_035812-T1
OS493_035813-T1
OS493_035814-T1
OS493_035815-T1ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
OS493_035816-T1EXOSOME COMPLEX COMPONENT
OS493_035817-T1CARNITINE O-ACYLTRANSFERASE
OS493_035818-T1CARNITINE O-ACYLTRANSFERASE
OS493_035819-T1PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN
OS493_035820-T1
OS493_035821-T1
OS493_035822-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_035823-T1
OS493_035824-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_035825-T1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
OS493_035826-T1
OS493_035827-T1
OS493_035828-T1
OS493_035829-T1
OS493_035830-T1
OS493_035831-T1
OS493_035832-T1
OS493_035834-T1
OS493_035835-T1
OS493_035836-T1GRANULIN
OS493_035837-T1
OS493_035838-T1
OS493_035839-T1
OS493_035840-T1
OS493_035841-T1
OS493_035842-T1
OS493_035843-T1SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2
OS493_035844-T1SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2
OS493_035845-T1
OS493_035846-T1
OS493_035847-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_035848-T1
OS493_035849-T1
OS493_035850-T1TESTIS EXPRESSED 11
OS493_035851-T1
OS493_035852-T1BIOTIN PROTEIN LIGASE
OS493_035853-T1METALLOPHOSPHOESTERASE
OS493_035854-T1COLLAGEN ALPHA
OS493_035855-T1PRE-MRNA-PROCESSING FACTOR 17
OS493_035856-T1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
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