Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_035806-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B |
OS493_035807-T1 | REST COREPRESSOR COREST PROTEIN-RELATED |
OS493_035808-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_035809-T1 | HEAT SHOCK PROTEIN 70KDA |
OS493_035810-T1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
OS493_035811-T1 | MOLYBDENUM COFACTOR BIOSYNTHESIS |
OS493_035812-T1 | |
OS493_035813-T1 | |
OS493_035814-T1 | |
OS493_035815-T1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
OS493_035816-T1 | EXOSOME COMPLEX COMPONENT |
OS493_035817-T1 | CARNITINE O-ACYLTRANSFERASE |
OS493_035818-T1 | CARNITINE O-ACYLTRANSFERASE |
OS493_035819-T1 | PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN |
OS493_035820-T1 | |
OS493_035821-T1 | |
OS493_035822-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_035823-T1 | |
OS493_035824-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_035825-T1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
OS493_035826-T1 | |
OS493_035827-T1 | |
OS493_035828-T1 | |
OS493_035829-T1 | |
OS493_035830-T1 | |
OS493_035831-T1 | |
OS493_035832-T1 | |
OS493_035834-T1 | |
OS493_035835-T1 | |
OS493_035836-T1 | GRANULIN |
OS493_035837-T1 | |
OS493_035838-T1 | |
OS493_035839-T1 | |
OS493_035840-T1 | |
OS493_035841-T1 | |
OS493_035842-T1 | |
OS493_035843-T1 | SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2 |
OS493_035844-T1 | SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2 |
OS493_035845-T1 | |
OS493_035846-T1 | |
OS493_035847-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
OS493_035848-T1 | |
OS493_035849-T1 | |
OS493_035850-T1 | TESTIS EXPRESSED 11 |
OS493_035851-T1 | |
OS493_035852-T1 | BIOTIN PROTEIN LIGASE |
OS493_035853-T1 | METALLOPHOSPHOESTERASE |
OS493_035854-T1 | COLLAGEN ALPHA |
OS493_035855-T1 | PRE-MRNA-PROCESSING FACTOR 17 |
OS493_035856-T1 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |