About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_035749-T1
OS493_035751-T1
OS493_035752-T1
OS493_035754-T1OTU DOMAIN CONTAINING PROTEIN
OS493_035755-T1
OS493_035756-T1CONTACTIN 5
OS493_035758-T1CONTACTIN 5
OS493_035759-T1
OS493_035760-T1
OS493_035761-T1
OS493_035762-T1
OS493_035763-T1CHROMOBOX PROTEIN
OS493_035764-T1
OS493_035765-T1
OS493_035766-T1
OS493_035767-T1
OS493_035768-T1
OS493_035770-T1
OS493_035771-T1
OS493_035772-T1
OS493_035773-T1
OS493_035774-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_035775-T1
OS493_035777-T1
OS493_035778-T1
OS493_035779-T1
OS493_035780-T1SENTRIN/SUMO-SPECIFIC PROTEASE
OS493_035781-T1
OS493_035782-T1AAA-FAMILY ATPASE
OS493_035783-T1NOTCH LIGAND FAMILY MEMBER
OS493_035784-T1
OS493_035785-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_035786-T1NOTCH LIGAND FAMILY MEMBER
OS493_035787-T1DULLARD PROTEIN PHOSPHATASE
OS493_035788-T1TRANSCRIPTIONAL REPRESSOR PROTEIN YY
OS493_035789-T1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
OS493_035790-T1AAA-FAMILY ATPASE
OS493_035791-T1METALLOPROTEASE M41 FTSH
OS493_035792-T1
OS493_035794-T1
OS493_035795-T1
OS493_035796-T1
OS493_035797-T1HYDROLASE OF PHP SUPERFAMILY-RELATED PROTEIN
OS493_035798-T1SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
OS493_035799-T1FATTY ACID DESATURASE 2
OS493_035801-T1FATTY ACID DESATURASE 2
OS493_035802-T1ZINC FINGER PROTEIN ZIC AND GLI
OS493_035803-T1MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20
OS493_035804-T1
OS493_035805-T1
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