About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014176-T1RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED
OS493_014177-T1INWARD RECTIFIER POTASSIUM CHANNEL
OS493_014180-T1ADENYLYL CYCLASE-ASSOCIATED PROTEIN
OS493_014182-T1-
OS493_014183-T1-
OS493_014184-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_014185-T1-
OS493_014186-T1DISRUPTED IN SCHIZOPHRENIA 1 PROTEIN
OS493_014187-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_014188-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_014190-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_014191-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_014192-T1MICROSPHERULE PROTEIN 1
OS493_014193-T1BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED
OS493_014195-T1-
OS493_014196-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_014197-T1PROPERDIN
OS493_014198-T1OLIGOPEPTIDE TRANSPORTER-RELATED
OS493_014199-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_014200-T1-
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