Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_035476-T1 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 |
OS493_035477-T1 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 |
OS493_035478-T1 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 |
OS493_035479-T1 | |
OS493_035480-T1 | UNCHARACTERIZED |
OS493_035482-T1 | |
OS493_035483-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
OS493_035484-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_035485-T1 | UNCHARACTERIZED |
OS493_035486-T1 | ZINC/IRON TRANSPORTER |
OS493_035487-T1 | BCL-2 RELATED |
OS493_035488-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_035489-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L24 |
OS493_035490-T1 | |
OS493_035491-T1 | ARGININE/SERINE RICH SPLICING FACTOR SF4/14 |
OS493_035492-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035493-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035494-T1 | |
OS493_035495-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035496-T1 | |
OS493_035497-T1 | CD59 GLYCOPROTEIN |
OS493_035498-T1 | |
OS493_035499-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035500-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035501-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035502-T1 | SUPERKILLER 3 PROTEIN-RELATED |
OS493_035503-T1 | PROTEIN CBG23806 |
OS493_035504-T1 | SERINE INCORPORATOR |
OS493_035505-T1 | HEDGEHOG |
OS493_035506-T1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
OS493_035507-T1 | UNCHARACTERIZED |
OS493_035508-T1 | UNCHARACTERIZED |
OS493_035509-T1 | |
OS493_035510-T1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
OS493_035511-T1 | TUMOR PROTEIN D52 |
OS493_035512-T1 | |
OS493_035513-T1 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
OS493_035514-T1 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
OS493_035515-T1 | 39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL |
OS493_035516-T1 | SERINE/THREONINE-PROTEIN KINASE DOA-RELATED |
OS493_035517-T1 | |
OS493_035518-T1 | MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 |
OS493_035519-T1 | |
OS493_035520-T1 | SYNTROPHIN |
OS493_035521-T1 | SYNTROPHIN |
OS493_035522-T1 | TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 |
OS493_035523-T1 | AMINO ACID TRANSPORTER |
OS493_035524-T1 | |
OS493_035525-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035526-T1 |