Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_035527-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035528-T1 | |
OS493_035529-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035530-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035531-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035532-T1 | |
OS493_035533-T1 | |
OS493_035534-T1 | CXC2 DOMAIN-CONTAINING PROTEIN |
OS493_035535-T1 | |
OS493_035536-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035537-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035538-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_035539-T1 | |
OS493_035540-T1 | |
OS493_035541-T1 | |
OS493_035542-T1 | |
OS493_035543-T1 | |
OS493_035544-T1 | FOLLISTATIN-RELATED |
OS493_035547-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_035549-T1 | FOLLISTATIN-RELATED |
OS493_035550-T1 | FOLLISTATIN-RELATED |
OS493_035554-T1 | |
OS493_035555-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_035557-T1 | |
OS493_035558-T1 | FIBRILLIN-RELATED |
OS493_035561-T1 | FOLLISTATIN-RELATED |
OS493_035563-T1 | |
OS493_035564-T1 | |
OS493_035565-T1 | UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER |
OS493_035566-T1 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
OS493_035567-T1 | |
OS493_035568-T1 | GAMMA TUBULIN COMPLEX PROTEIN |
OS493_035569-T1 | 40S RIBOSOMAL PROTEIN S6 |
OS493_035570-T1 | DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG |
OS493_035571-T1 | KERATINOCYTE-ASSOCIATED PROTEIN 2 |
OS493_035572-T1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2 |
OS493_035573-T1 | HISTONE H1 |
OS493_035574-T1 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
OS493_035575-T1 | METHYLMALONYL-COA EPIMERASE |
OS493_035576-T1 | MONOACYLGLYCEROL LIPASE |
OS493_035577-T1 | RNA POLYMERASE III DNA DIRECTED -RELATED |
OS493_035578-T1 | |
OS493_035579-T1 | MOLYBDOPTERIN SYNTHASE RELATED |
OS493_035580-T1 | MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT |
OS493_035581-T1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
OS493_035582-T1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
OS493_035583-T1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
OS493_035584-T1 | SPARC OSTEONECTIN |
OS493_035585-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_035586-T1 | KINESIN-LIKE PROTEIN KLP-3 |