About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_035527-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035528-T1
OS493_035529-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035530-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035531-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035532-T1
OS493_035533-T1
OS493_035534-T1CXC2 DOMAIN-CONTAINING PROTEIN
OS493_035535-T1
OS493_035536-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035537-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035538-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_035539-T1
OS493_035540-T1
OS493_035541-T1
OS493_035542-T1
OS493_035543-T1
OS493_035544-T1FOLLISTATIN-RELATED
OS493_035547-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_035549-T1FOLLISTATIN-RELATED
OS493_035550-T1FOLLISTATIN-RELATED
OS493_035554-T1
OS493_035555-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_035557-T1
OS493_035558-T1FIBRILLIN-RELATED
OS493_035561-T1FOLLISTATIN-RELATED
OS493_035563-T1
OS493_035564-T1
OS493_035565-T1UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER
OS493_035566-T13-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
OS493_035567-T1
OS493_035568-T1GAMMA TUBULIN COMPLEX PROTEIN
OS493_035569-T140S RIBOSOMAL PROTEIN S6
OS493_035570-T1DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
OS493_035571-T1KERATINOCYTE-ASSOCIATED PROTEIN 2
OS493_035572-T1CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2
OS493_035573-T1HISTONE H1
OS493_035574-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
OS493_035575-T1METHYLMALONYL-COA EPIMERASE
OS493_035576-T1MONOACYLGLYCEROL LIPASE
OS493_035577-T1RNA POLYMERASE III DNA DIRECTED -RELATED
OS493_035578-T1
OS493_035579-T1MOLYBDOPTERIN SYNTHASE RELATED
OS493_035580-T1MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT
OS493_035581-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_035582-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_035583-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_035584-T1SPARC OSTEONECTIN
OS493_035585-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_035586-T1KINESIN-LIKE PROTEIN KLP-3
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