About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_035961-T1
OS493_035962-T1LITHOSTATHINE
OS493_035963-T1
OS493_035964-T1
OS493_035965-T1
OS493_035966-T1SLEI FAMILY PROTEIN
OS493_035967-T1FIBRILLIN-RELATED
OS493_035968-T1
OS493_035969-T1
OS493_035970-T1
OS493_035971-T1
OS493_035972-T1
OS493_035973-T1
OS493_035974-T1
OS493_035975-T1
OS493_035976-T1
OS493_035977-T1
OS493_035979-T1
OS493_035980-T1-
OS493_035982-T1
OS493_035983-T1
OS493_035984-T1PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN
OS493_035985-T1TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X
OS493_035986-T1RING FINGER PROTEIN 32
OS493_035987-T1RING FINGER PROTEIN 32
OS493_035988-T1
OS493_035989-T1
OS493_035990-T1
OS493_035991-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_035992-T1
OS493_035993-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_035994-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_035995-T1NUDIX HYDROLASE
OS493_035996-T1
OS493_035997-T1
OS493_035998-T1BRCA1-ASSOCIATED PROTEIN
OS493_035999-T1BRCA1-ASSOCIATED PROTEIN
OS493_036000-T1PRE-MRNA SPLICING FACTOR PRP8
OS493_036001-T1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
OS493_036002-T139S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL
OS493_036003-T1WD40 REPEAT PROTEIN
OS493_036004-T1
OS493_036005-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_036006-T1PROTEIN KINASE RELATED
OS493_036007-T1PROTEIN KINASE RELATED
OS493_036008-T1SERINE/ARGININE RICH SPLICING FACTOR
OS493_036009-T1ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
OS493_036010-T1
OS493_036011-T1REGULATORY-ASSOCIATED PROTEIN OF MTOR
OS493_036012-T1REGULATORY-ASSOCIATED PROTEIN OF MTOR
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