Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_036013-T1 | IQ DOMAIN-CONTAINING PROTEIN K |
OS493_036014-T1 | POLYCOMB GROUP PROTEIN |
OS493_036015-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_036016-T1 | |
OS493_036018-T1 | VHS DOMAIN CONTAINING PROTEIN FAMILY |
OS493_036019-T1 | PROTEIN PM1 |
OS493_036020-T1 | |
OS493_036021-T1 | - |
OS493_036022-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_036023-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_036024-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_036025-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_036026-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_036027-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_036028-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_036029-T1 | DRAB11-RELATED |
OS493_036031-T1 | |
OS493_036032-T1 | TRICHOHYALIN-RELATED |
OS493_036033-T1 | |
OS493_036034-T1 | TRICHOHYALIN-RELATED |
OS493_036035-T1 | |
OS493_036036-T1 | BETA-AMYLOID BINDING PROTEIN-RELATED |
OS493_036037-T1 | SYNTAXIN-18 |
OS493_036038-T1 | |
OS493_036039-T1 | DNA REPLICATION REGULATOR DPB11-RELATED |
OS493_036040-T1 | TRNA DIMETHYLALLYLTRANSFERASE |
OS493_036041-T1 | PROTEIN DPCD |
OS493_036043-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_036044-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_036045-T1 | DRAB11-RELATED |
OS493_036046-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
OS493_036047-T1 | PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 |
OS493_036048-T1 | PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 |
OS493_036049-T1 | ADULT RETINA PROTEIN |
OS493_036050-T1 | |
OS493_036051-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_036052-T1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
OS493_036053-T1 | PROTEIN DPCD |
OS493_036054-T1 | |
OS493_036055-T1 | |
OS493_036056-T1 | KINESIN-RELATED |
OS493_036057-T1 | HEMOGLOBINASE FAMILY MEMBER |
OS493_036058-T1 | PROTEASOME SUBUNIT ALPHA/BETA |
OS493_036059-T1 | |
OS493_036060-T1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
OS493_036063-T1 | |
OS493_036066-T1 | MED-6-RELATED |
OS493_036068-T1 | |
OS493_036069-T1 | ACETYL-COENZYME A SYNTHETASE |
OS493_036070-T1 | ACETYL-COENZYME A SYNTHETASE |